GWAS837704_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS837704_H (color vision disorder QTL GWAS837704 (human)) Homo sapiens

Symbol: GWAS837704_H
Name: color vision disorder QTL GWAS837704 (human)
RGD ID: 407188728
Trait: color vision disorder
LOD Score: Not Available
P Value: 7.0E-6
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh38120,613,963 - 20,613,964RGD_MAPPER_PIPELINEGRCh38
GRCh37120,940,456 - 20,940,457RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS837704_HHumancolor vision disorder  IAGPrs72553953405850206 GWAS_CATALOGPMID:37359372
References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
1322377CDAcytidine deaminase12058909720618903Human
155634560LOC127267939NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:20940319-2094125712061382620614764Human

Position Markers

Peak: (rs72553953)
Human AssemblyChrPosition (strand)Source
GRCh38120,613,963 - 20,613,964RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1298451OSTEAR17_HOsteoarthritis QTL 17 (human)2.40.0004Joint/bone inflammationosteoarthritis11125188105Human
1576329MYI9_HMyocardial infarction susceptibility QTL 9 (human)12Myocardial infarction susceptibilityearly-onset1758550333585503Human
1298463BP9_HBlood pressure QTL 9 (human)3.9Blood pressurehypertension susceptibility1125188105Human
1576325MYI1_HMyocardial infarction susceptibility QTL 1 (human)11.681e-12Myocardial infarction susceptibilityearly-onset1758550333585503Human
1643380BW316_HBody weight QTL 316 (human)2.620.0002Body weightBMI1758550333585503Human
407188728GWAS837704_Hcolor vision disorder QTL GWAS837704 (human)0.000007color vision disorder12061396320613964Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS837704_H GCST90301671 Color vision defects (Tritan) 12 Silk Road (founder/genetic isolate) cases, 508 Silk Road (founder/genetic isolate) controls A 0.986 0.000007 5.155 rs72553953 0.1812021 PMID:37359372
Database Acc Id Source(s)
GWAS Catalog GCST90301671 GWAS Catalog

RGD Curation Notes
Note Type Note Reference