GWAS836844_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS836844_H (self reported educational attainment QTL GWAS836844 (human)) Homo sapiens

Symbol: GWAS836844_H
Name: self reported educational attainment QTL GWAS836844 (human)
RGD ID: 407187868
Trait: self reported educational attainment
LOD Score: Not Available
P Value: 9.0E-10
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh381556,700,646 - 56,700,647RGD_MAPPER_PIPELINEGRCh38
GRCh371556,992,844 - 56,992,845RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS836844_HHumanself reported educational attainment  IAGPrs3816752405850206 GWAS_CATALOGPMID:30038396
References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
1323434ZNF280Dzinc finger protein 280D155663017656733509Human

Position Markers

Peak: (rs3816752)
Human AssemblyChrPosition (strand)Source
GRCh381556,700,646 - 56,700,647RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
407192535GWAS841511_Heducational attainment QTL GWAS841511 (human)4e-09educational attainment155670064656700647Human
407136640GWAS785616_Hself reported educational attainment QTL GWAS785616 (human)0.0000001self reported educational attainment155670064656700647Human
2299958PRSTS330_HProstate tumor susceptibility QTL 330 (human)1.020.0151Prostate tumor susceptibility153479023060790230Human
407187868GWAS836844_Hself reported educational attainment QTL GWAS836844 (human)9e-10self reported educational attainment155670064656700647Human
1559354LDLPS4_HLow density lipoprotein particle size QTL 4 (human)2.20.019LDL particle size153479023060790230Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS785616_H GCST007037 Educational attainment (years of education) approximately 455,000 European ancestry individuals ? NR 1E-7 7 rs3816752 N/A self reported educational attainment (EFO:0004784)
 PMID:30595370
GWAS836844_H GCST006571 Educational attainment (MTAG) 1,311,438 European ancestry individuals A 0.3507 9E-10 9.046 rs3816752 0.0084 self reported educational attainment (EFO:0004784)
 PMID:30038396
GWAS841511_H GCST90100570 Educational attainment 451,800 European or unknown ancestry individuals ? NR 4E-9 8.398 rs3816752 N/A educational attainment (EFO:0011015)
 PMID:34855049
Database Acc Id Source(s)
GWAS Catalog GCST006571 GWAS Catalog

RGD Curation Notes
Note Type Note Reference