GWAS833001_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS833001_H (blood protein measurement QTL GWAS833001 (human)) Homo sapiens

Symbol: GWAS833001_H
Name: blood protein measurement QTL GWAS833001 (human)
RGD ID: 407184025
Trait: blood protein measurement
Measurement Type: blood protein measurement   (CMO:0000028)    
LOD Score: Not Available
P Value: 8.0E-17
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh3812,302,522 - 2,302,523RGD_MAPPER_PIPELINEGRCh38
GRCh3712,233,961 - 2,233,962RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Data Annotations    Click to see Annotation Detail View

Clinical Measurement
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS833001_HHumanblood protein measurement  IAGPrs11576356405850206Based on the EFO term IDGWAS_CATALOGPMID:38412862

Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS833001_HHumanblood protein measurement  IAGPrs11576356405850206 GWAS_CATALOGPMID:38412862
Experimental Data Annotations     Click to see Annotation Detail View

Clinical Measurement

References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
1342955SKISKI proto-oncogene122283192310213Human

Position Markers

Peak: (rs11576356)
Human AssemblyChrPosition (strand)Source
GRCh3812,302,522 - 2,302,523RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1298451OSTEAR17_HOsteoarthritis QTL 17 (human)2.40.0004Joint/bone inflammationosteoarthritis11125188105Human
407208581GWAS857557_Hblood protein measurement QTL GWAS857557 (human)6e-27blood protein measurementblood protein measurement (CMO:0000028)123025222302523Human
407206036GWAS855012_Hblood protein measurement QTL GWAS855012 (human)2e-16blood protein measurementblood protein measurement (CMO:0000028)123025222302523Human
407205782GWAS854758_Hblood protein measurement QTL GWAS854758 (human)3e-19blood protein measurementblood protein measurement (CMO:0000028)123025222302523Human
407176524GWAS825500_Hblood protein measurement QTL GWAS825500 (human)4e-20blood protein measurementblood protein measurement (CMO:0000028)123025222302523Human
407165933GWAS814909_Hblood protein measurement QTL GWAS814909 (human)7e-17blood protein measurementblood protein measurement (CMO:0000028)123025222302523Human
1298463BP9_HBlood pressure QTL 9 (human)3.9Blood pressurehypertension susceptibility1125188105Human
407184025GWAS833001_Hblood protein measurement QTL GWAS833001 (human)8e-17blood protein measurementblood protein measurement (CMO:0000028)123025222302523Human
407185224GWAS834200_Hblood protein measurement QTL GWAS834200 (human)8e-19blood protein measurementblood protein measurement (CMO:0000028)123025222302523Human
406968332GWAS617308_Hplatelet component distribution width QTL GWAS617308 (human)2e-10platelet component distribution widthplatelet distribution width (CMO:0001350)123025222302523Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS617308_H GCST004616 Platelet distribution width 164,433 European ancestry individuals A 0.1787 2E-10 9.699 rs11576356 0.02989036 platelet component distribution width (EFO:0007984)
 PMID:27863252
GWAS814909_H GCST90315886 SRPK2/VASH1 protein level ratio 43,509 European ancestry individuals ? NR 7E-17 16.155 rs11576356 0.074311 blood protein measurement (EFO:0007937)
 PMID:38412862
GWAS825500_H GCST90315480 MPHOSPH8/VASH1 protein level ratio 43,509 European ancestry individuals ? NR 4E-20 19.398 rs11576356 0.083712 blood protein measurement (EFO:0007937)
 PMID:38412862
GWAS833001_H GCST90314481 DKK1/SPARC protein level ratio 43,509 European ancestry individuals ? NR 8E-17 16.097 rs11576356 0.0741124 blood protein measurement (EFO:0007937)
 PMID:38412862
GWAS834200_H GCST90314482 DKK1/VASH1 protein level ratio 43,509 European ancestry individuals ? NR 8E-19 18.097 rs11576356 0.0793674 blood protein measurement (EFO:0007937)
 PMID:38412862
GWAS854758_H GCST90313444 BACH1/NFATC1 protein level ratio 43,509 European ancestry individuals ? NR 3E-19 18.523 rs11576356 0.0794888 blood protein measurement (EFO:0007937)
 PMID:38412862
GWAS855012_H GCST90313463 BANK1/NFATC1 protein level ratio 43,509 European ancestry individuals ? NR 2E-16 15.699 rs11576356 0.0735586 blood protein measurement (EFO:0007937)
 PMID:38412862
GWAS857557_H GCST90315429 METAP1D/VASH1 protein level ratio 43,509 European ancestry individuals ? NR 6E-27 26.222 rs11576356 0.0959358 blood protein measurement (EFO:0007937)
 PMID:38412862
None Available GCST90313415 AXIN1/NFATC1 protein level ratio 43,509 European ancestry individuals ? NR 8E-17 16.097 rs11576356 0.0742864 blood protein measurement (EFO:0007937)
 PMID:38412862
Database Acc Id Source(s)
GWAS Catalog GCST90313415 GWAS Catalog
  GCST90314481 GWAS Catalog

RGD Curation Notes
Note Type Note Reference