GWAS815839_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS815839_H (phosphatidylethanolamine measurement QTL GWAS815839 (human)) Homo sapiens

Symbol: GWAS815839_H
Name: phosphatidylethanolamine measurement QTL GWAS815839 (human)
RGD ID: 407166863
Trait: phosphatidylethanolamine measurement
LOD Score: Not Available
P Value: 4.0E-11
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh381558,254,498 - 58,254,499RGD_MAPPER_PIPELINEGRCh38
GRCh371558,546,697 - 58,546,698RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS815839_HHumanphosphatidylethanolamine measurement  IAGPrs56314708405850206 GWAS_CATALOGPMID:34503513
References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Position Markers

Peak: (rs56314708)
Human AssemblyChrPosition (strand)Source
GRCh381558,254,498 - 58,254,499RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2299958PRSTS330_HProstate tumor susceptibility QTL 330 (human)1.020.0151Prostate tumor susceptibility153479023060790230Human
407166863GWAS815839_Hphosphatidylethanolamine measurement QTL GWAS815839 (human)4e-11phosphatidylethanolamine measurement155825449858254499Human
1559354LDLPS4_HLow density lipoprotein particle size QTL 4 (human)2.20.019LDL particle size153479023060790230Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS815839_H GCST90060689 Phosphatidylethanolamine(36:4)_[M-H]1- levels 5,662 Pakistani ancestry individuals A NR 4E-11 10.398 rs56314708 0.0369 phosphatidylethanolamine measurement (EFO:0010228)
 PMID:34503513
Database Acc Id Source(s)
GWAS Catalog GCST90060689 GWAS Catalog

RGD Curation Notes
Note Type Note Reference