GWAS805693_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS805693_H (triglyceride measurement, high density lipoprotein cholesterol measurement QTL GWAS805693 (human)) Homo sapiens

Symbol: GWAS805693_H
Name: triglyceride measurement, high density lipoprotein cholesterol measurement QTL GWAS805693 (human)
RGD ID: 407156717
Trait: triglyceride measurement, high density lipoprotein cholesterol measurement
Measurement Type: blood high density lipoprotein cholesterol level   (CMO:0000052)    
blood triglyceride level   (CMO:0000118)    
LOD Score: Not Available
P Value: 6.0E-9
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh38629,937,660 - 29,937,661RGD_MAPPER_PIPELINEGRCh38
GRCh37629,905,437 - 29,905,438RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Data Annotations    Click to see Annotation Detail View

Clinical Measurement
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS805693_HHumanblood high density lipoprotein cholesterol level  IAGPrs3098023405850206Based on the EFO term IDGWAS_CATALOGPMID:35213538
GWAS805693_HHumanblood triglyceride level  IAGPrs3098023405850206Based on the EFO term IDGWAS_CATALOGPMID:35213538

Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS805693_HHumanhigh density lipoprotein cholesterol measurement  IAGPrs3098023405850206 GWAS_CATALOGPMID:35213538
GWAS805693_HHumantriglyceride measurement  IAGPrs3098023405850206 GWAS_CATALOGPMID:35213538
Experimental Data Annotations     Click to see Annotation Detail View

References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
151673698LOC124901298uncharacterized LOC12490129862992819829945593Human

Position Markers

Peak: (rs3098023)
Human AssemblyChrPosition (strand)Source
GRCh38629,937,660 - 29,937,661RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1358839MULTSCL5_HMultiple sclerosis susceptibility QTL 5 (human)Multiple sclerosis susceptibility61958431145584311Human
1643377BW325_HBody weight QTL 325 (human)2.320.0005Body fat amount6691196032911960Human
1643569GLUCO21_HGlucose level QTL 21 (human)0.021Glucose levelnon-insulin-dependent6691196032911960Human
1298458BW9_HBody weight QTL 9 (human)2.70.0002Body fat amount6691196032911960Human
407156717GWAS805693_Htriglyceride measurement, high density lipoprotein cholesterol measurement QTL GWAS805693 (human)6e-09triglyceride measurement, high density lipoprotein cholesterol measurementblood high density lipoprotein cholesterol level (CMO:0000052)62993766029937661Human
1298431RA11_HRheumatoid arthritis QTL 11 (human)0.0000024Joint/bone inflammationrheumatoid arthritis61991188340191709Human
1358854MULTSCL4_HMultiple sclerosis susceptibility QTL 4 (human)Multiple sclerosis susceptibility6691196032911960Human
407157074GWAS806050_Htriglyceride measurement, high density lipoprotein cholesterol measurement QTL GWAS806050 (human)2e-08triglyceride measurement, high density lipoprotein cholesterol measurementblood high density lipoprotein cholesterol level (CMO:0000052)62993766029937661Human
407157747GWAS806723_Hphospholipid measurement, high density lipoprotein cholesterol measurement QTL GWAS806723 (human)9e-11phospholipid measurement, high density lipoprotein cholesterol measurementblood high density lipoprotein cholesterol level (CMO:0000052)62993766029937661Human
407209564GWAS858540_Htriglyceride measurement, high density lipoprotein cholesterol measurement QTL GWAS858540 (human)3e-09triglyceride measurement, high density lipoprotein cholesterol measurementblood high density lipoprotein cholesterol level (CMO:0000052)62993766029937661Human
407208703GWAS857679_Hphospholipid measurement, high density lipoprotein cholesterol measurement QTL GWAS857679 (human)3e-13phospholipid measurement, high density lipoprotein cholesterol measurementblood high density lipoprotein cholesterol level (CMO:0000052)62993766029937661Human
1358857MULTSCL19_HMultiple sclerosis susceptibility QTL 19 (human)Multiple sclerosis susceptibility61958431145584311Human
1643399BMD5_HBone mineral density QTL 5 (human)2.320.0005Bone mineral density6691196032911960Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS805693_H GCST90092854 Triglyceride levels in large HDL 115,082 European ancestry individuals A 0.863945 6E-9 8.222 rs3098023 0.0349811 triglyceride measurement (EFO:0004530)
high density lipoprotein cholesterol measurement (EFO:0004612)
 PMID:35213538
GWAS806050_H GCST90092829 Triglyceride levels in HDL 115,082 European ancestry individuals A 0.863945 2E-8 7.699 rs3098023 0.0348764 triglyceride measurement (EFO:0004530)
high density lipoprotein cholesterol measurement (EFO:0004612)
 PMID:35213538
GWAS806723_H GCST90092827 Phospholipid levels in HDL 115,082 European ancestry individuals A 0.863945 9E-11 10.046 rs3098023 0.0369227 phospholipid measurement (EFO:0004639)
high density lipoprotein cholesterol measurement (EFO:0004612)
 PMID:35213538
GWAS857679_H GCST90092900 Phospholipid levels in medium HDL 115,082 European ancestry individuals A 0.863945 3E-13 12.523 rs3098023 0.0429887 phospholipid measurement (EFO:0004639)
high density lipoprotein cholesterol measurement (EFO:0004612)
 PMID:35213538
GWAS858540_H GCST90092902 Triglyceride levels in medium HDL 115,082 European ancestry individuals A 0.863945 3E-9 8.523 rs3098023 0.0367615 triglyceride measurement (EFO:0004530)
high density lipoprotein cholesterol measurement (EFO:0004612)
 PMID:35213538
Database Acc Id Source(s)
GWAS Catalog GCST90092854 GWAS Catalog

RGD Curation Notes
Note Type Note Reference