GWAS803575_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS803575_H (S-6-hydroxywarfarin to S-warfarin ratio measurement QTL GWAS803575 (human)) Homo sapiens

Symbol: GWAS803575_H
Name: S-6-hydroxywarfarin to S-warfarin ratio measurement QTL GWAS803575 (human)
RGD ID: 407154599
Trait: S-6-hydroxywarfarin to S-warfarin ratio measurement
LOD Score: Not Available
P Value: 4.0E-6
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh3811,123,539 - 1,123,540RGD_MAPPER_PIPELINEGRCh38
GRCh3711,058,919 - 1,058,920RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS803575_HHumanS-6-hydroxywarfarin to S-warfarin ratio measurement  IAGPrs535350689405850206 GWAS_CATALOGPMID:36210801
References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
151669721LOC124903819uncharacterized LOC124903819111229031128984Human
155634806LOC127266777H3K4me1 hESC enhancer GRCh37_chr1:1058337-1059155111229571123775Human

Position Markers

Peak: (rs535350689)
Human AssemblyChrPosition (strand)Source
GRCh3811,123,539 - 1,123,540RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1298451OSTEAR17_HOsteoarthritis QTL 17 (human)2.40.0004Joint/bone inflammationosteoarthritis11125188105Human
407154599GWAS803575_HS-6-hydroxywarfarin to S-warfarin ratio measurement QTL GWAS803575 (human)0.000004S-6-hydroxywarfarin to S-warfarin ratio measurement111235391123540Human
1298463BP9_HBlood pressure QTL 9 (human)3.9Blood pressurehypertension susceptibility1125188105Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS803575_H GCST90129571 S-6-hydroxywarfarin to S-warfarin ratio 510 Sub-Saharan African ancestry individuals ? NR 0.000004 5.398 rs535350689 0.40676 S-6-hydroxywarfarin to S-warfarin ratio measurement (EFO:0803332)
 PMID:36210801
Database Acc Id Source(s)
GWAS Catalog GCST90129571 GWAS Catalog

RGD Curation Notes
Note Type Note Reference