GWAS801058_H QTL Report (Homo sapiens) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
QTL Registration

QTL: GWAS801058_H (metabolic disease, COVID-19 QTL GWAS801058 (human)) Homo sapiens

Symbol: GWAS801058_H
Name: metabolic disease, COVID-19 QTL GWAS801058 (human)
RGD ID: 407152082
Trait: metabolic disease, COVID-19
LOD Score: Not Available
P Value: 6.0E-6
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh381549,270,804 - 49,270,805RGD_MAPPER_PIPELINEGRCh38
GRCh371549,563,001 - 49,563,002RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Disease Annotations     Click to see Annotation Detail View

Phenotype Annotations     Click to see Annotation Detail View

Human Phenotype
References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
1318611GALK2galactokinase 2154915577449367740Human

Position Markers

Peak: (rs117488928)
Human AssemblyChrPosition (strand)Source
GRCh381549,270,804 - 49,270,805RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1643273BW330_HBody Weight QTL 330 (human)1.050.014Body weightbody mass index152686671952866719Human
1559411SCL107_HSerum cholesterol level QTL 107 (human)3.88Lipid leveltriglyceride152654355252543552Human
407152352GWAS801328_Hmetabolic disease, COVID-19 QTL GWAS801328 (human)0.000001metabolic disease, COVID-19154927080449270805Human
2299958PRSTS330_HProstate tumor susceptibility QTL 330 (human)1.020.0151Prostate tumor susceptibility153479023060790230Human
407152082GWAS801058_Hmetabolic disease, COVID-19 QTL GWAS801058 (human)0.000006metabolic disease, COVID-19154927080449270805Human
1559354LDLPS4_HLow density lipoprotein particle size QTL 4 (human)2.20.019LDL particle size153479023060790230Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS801058_H GCST90102531 COVID-19 (severe vs population) x cardiometabolic health status interaction (joint test) 2,402 European ancestry cases, 375,649 European ancestry controls C 0.036988 0.000006 5.222 rs117488928 0.96 metabolic disease (EFO:0000589)
 PMID:35096005
GWAS801328_H GCST90102532 COVID-19 (severe vs population) x cardiometabolic health status interaction 2,402 European ancestry cases, 375,649 European ancestry controls C 0.036988 0.000001 6 rs117488928 1.79 metabolic disease (EFO:0000589)
 PMID:35096005
Database Acc Id Source(s)
GWAS Catalog GCST90102531 GWAS Catalog

RGD Curation Notes
Note Type Note Reference