GWAS799601_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS799601_H (low density lipoprotein triglyceride measurement QTL GWAS799601 (human)) Homo sapiens

Symbol: GWAS799601_H
Name: low density lipoprotein triglyceride measurement QTL GWAS799601 (human)
RGD ID: 407150625
Trait: low density lipoprotein triglyceride measurement
LOD Score: Not Available
P Value: 1.0E-9
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh381558,279,783 - 58,279,784RGD_MAPPER_PIPELINEGRCh38
GRCh371558,571,982 - 58,571,983RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model




#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records



Peak: (rs11854318)
Human AssemblyChrPosition (strand)Source
GRCh381558,279,783 - 58,279,784RGD_MAPPER_PIPELINE


1 to 10 of 29 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
597517532GWAS1613606_Hfatty acid measurement QTL GWAS1613606 (human)1e-14fatty acid measurement155827978358279784Human
597452763GWAS1548837_Hlow density lipoprotein triglyceride measurement QTL GWAS1548837 (human)5e-10low density lipoprotein triglyceride measurementblood low density lipoprotein triglyceride level (CMO:0002687)155827978358279784Human
597451860GWAS1547934_Hlow density lipoprotein triglyceride measurement QTL GWAS1547934 (human)1e-09low density lipoprotein triglyceride measurementblood low density lipoprotein triglyceride level (CMO:0002687)155827978358279784Human
597453204GWAS1549278_Hlow density lipoprotein triglyceride measurement QTL GWAS1549278 (human)2e-10low density lipoprotein triglyceride measurementblood low density lipoprotein triglyceride level (CMO:0002687)155827978358279784Human
407152906GWAS801882_Hlow density lipoprotein triglyceride measurement QTL GWAS801882 (human)2e-09low density lipoprotein triglyceride measurement155827978358279784Human
597441165GWAS1537239_Htriglyceride measurement, high density lipoprotein cholesterol measurement QTL GWAS1537239 (human)1e-52triglyceride measurement, high density lipoprotein cholesterol measurementblood high density lipoprotein cholesterol level (CMO:0000052)155827978358279784Human
2299958PRSTS330_HProstate tumor susceptibility QTL 330 (human)1.020.0151Prostate tumor susceptibility153479023060790230Human
407152605GWAS801581_Hlow density lipoprotein triglyceride measurement QTL GWAS801581 (human)2e-10low density lipoprotein triglyceride measurement155827978358279784Human
407150105GWAS799081_Hlow density lipoprotein triglyceride measurement QTL GWAS799081 (human)5e-10low density lipoprotein triglyceride measurement155827978358279784Human
597516995GWAS1613069_Htotal lipids in small VLDL QTL GWAS1613069 (human)9e-10total lipids in small VLDL155827978358279784Human

1 to 10 of 29 rows


1 to 20 of 20 rows
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1780134_H GCST90093038 Triglyceride levels in very small VLDL 115,082 European ancestry individuals G 0.725305 8E-65 64.097 rs11854318 0.0768435 triglyceride measurement (EFO:0004530)
blood VLDL cholesterol amount (OBA:VT0005144)
 PMID:35213538
GWAS1532013_H GCST90092947 Cholesteryl esters to total lipids ratio in small HDL 115,082 European ancestry individuals G 0.725305 1E-75 75 rs11854318 0.0835204 cholesteryl esters:total lipids ratio (EFO:0020944)
high density lipoprotein cholesterol measurement (EFO:0004612)
 PMID:35213538
GWAS1537239_H GCST90092829 Triglyceride levels in HDL 115,082 European ancestry individuals G 0.725305 1E-52 52 rs11854318 0.0693779 triglyceride measurement (EFO:0004530)
high density lipoprotein cholesterol measurement (EFO:0004612)
 PMID:35213538
GWAS1543030_H GCST90092915 Triglycerides to total lipids ratio in medium LDL 115,082 European ancestry individuals G 0.725305 6E-51 50.222 rs11854318 0.0682627 triglycerides:total lipids ratio (EFO:0020947)
low density lipoprotein cholesterol measurement (EFO:0004611)
 PMID:35213538
GWAS1543672_H GCST90092890 Triglyceride levels in LDL 115,082 European ancestry individuals G 0.725305 3E-52 51.523 rs11854318 0.0691697 triglyceride measurement (EFO:0004530)
low density lipoprotein cholesterol measurement (EFO:0004611)
 PMID:35213538
GWAS1544191_H GCST90092866 Triglyceride levels in large LDL 115,082 European ancestry individuals G 0.725305 3E-68 67.523 rs11854318 0.0794022 triglyceride measurement (EFO:0004530)
low density lipoprotein cholesterol measurement (EFO:0004611)
 PMID:35213538
GWAS1547934_H GCST90091538 Fasting triglycerides in LDL null A 0.291483312 1E-9 9 rs11854318 0.137013 low density lipoprotein triglyceride measurement (EFO:0009946)
 PMID:34610981
GWAS1548837_H GCST90091714 Postprandial triglycerides levels in medium LDL null A 0.289429952 5E-10 9.302 rs11854318 0.147382 low density lipoprotein triglyceride measurement (EFO:0009946)
 PMID:34610981
GWAS1549278_H GCST90091553 Fasting triglycerides levels in large LDL null A 0.291483312 2E-10 9.699 rs11854318 0.144517 low density lipoprotein triglyceride measurement (EFO:0009946)
 PMID:34610981
GWAS1549503_H GCST90091693 Postprandial triglycerides levels in large LDL null A 0.289478381 1E-10 10 rs11854318 0.151992 low density lipoprotein triglyceride measurement (EFO:0009946)
 PMID:34610981
GWAS1549510_H GCST90091678 Postprandial triglycerides in LDL null A 0.289478381 2E-9 8.699 rs11854318 0.142287 low density lipoprotein triglyceride measurement (EFO:0009946)
 PMID:34610981
GWAS1791087_H GCST90269606 Concentration of small VLDL particles (UKB data field 23509) 88,329 European ancestry individuals A 0.274614 3E-10 9.523 rs11854318 0.0332358 blood VLDL cholesterol amount (OBA:VT0005144)
 PMID:36764567
GWAS1791443_H GCST90269525 Concentration of VLDL particles (UKB data field 23428) 88,329 European ancestry individuals A 0.274614 6E-13 12.222 rs11854318 0.0382331 blood VLDL cholesterol amount (OBA:VT0005144)
 PMID:36764567
GWAS1611527_H GCST90269545 Saturated fatty acids levels (UKB data field 23448) 88,268 European ancestry individuals A 0.27466 3E-13 12.523 rs11854318 0.0384189 saturated fatty acids measurement (EFO:0022304)
 PMID:36764567
GWAS1613069_H GCST90269607 Total lipids in small VLDL (UKB data field 23510) 88,329 European ancestry individuals A 0.274614 9E-10 9.046 rs11854318 0.0324057 total lipids in small VLDL (EFO:0022148)
 PMID:36764567
GWAS1613606_H GCST90269539 Total fatty acids levels (UKB data field 23442) 88,268 European ancestry individuals A 0.27466 1E-14 14 rs11854318 0.0406793 fatty acid measurement (EFO:0005110)
 PMID:36764567
GWAS1620074_H GCST90269708 Cholesteryl esters to total lipids in IDL percentage (UKB data field 23611) 88,329 European ancestry individuals A 0.274614 9E-28 27.046 rs11854318 0.0568734 cholesteryl esters to total lipids in IDL percentage (EFO:0022247)
 PMID:36764567
GWAS1620109_H GCST90269647 Triglycerides in small LDL (UKB data field 23550) 88,329 European ancestry individuals A 0.274614 6E-14 13.222 rs11854318 0.0389869 triglycerides in small LDL measurement (EFO:0022323)
 PMID:36764567
GWAS1620424_H GCST90269707 Cholesterol to total lipids in IDL percentage (UKB data field 23610) 88,329 European ancestry individuals A 0.274614 2E-29 28.699 rs11854318 0.0586106 cholesterol to total lipids in IDL percentage (EFO:0022233)
 PMID:36764567
GWAS1623723_H GCST90269716 Phospholipids to total lipids in medium LDL percentage (UKB data field 23619) 88,329 European ancestry individuals A 0.274614 7E-21 20.155 rs11854318 0.0497292 phospholipids:total lipids ratio (EFO:0020946)
 PMID:36764567
1 to 20 of 20 rows
Database
Acc Id
Source(s)
GWAS Catalog GCST90091538 GWAS Catalog

Note Type Note Reference