GWAS799283_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS799283_H (apolipoprotein A 1 measurement QTL GWAS799283 (human)) Homo sapiens

Symbol: GWAS799283_H
Name: apolipoprotein A 1 measurement QTL GWAS799283 (human)
RGD ID: 407150307
Trait: apolipoprotein A 1 measurement
Measurement Type: blood apolipoprotein AI level   (CMO:0000520)    
LOD Score: Not Available
P Value: 7.0E-10
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh381558,425,202 - 58,425,203RGD_MAPPER_PIPELINEGRCh38
GRCh371558,717,401 - 58,717,402RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Data Annotations    Click to see Annotation Detail View

Clinical Measurement
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS799283_HHumanblood apolipoprotein AI level  IAGPrs78936960405850206Based on the EFO term IDGWAS_CATALOGPMID:33462484

Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS799283_HHumanapolipoprotein A 1 measurement  IAGPrs78936960405850206 GWAS_CATALOGPMID:33462484
Experimental Data Annotations     Click to see Annotation Detail View

Clinical Measurement

References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Position Markers

Peak: (rs78936960)
Human AssemblyChrPosition (strand)Source
GRCh381558,425,202 - 58,425,203RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2299958PRSTS330_HProstate tumor susceptibility QTL 330 (human)1.020.0151Prostate tumor susceptibility153479023060790230Human
407223267GWAS872243_Hlow density lipoprotein cholesterol measurement QTL GWAS872243 (human)4e-08low density lipoprotein cholesterol measurementblood low density lipoprotein cholesterol level (CMO:0000053)155842520258425203Human
407150307GWAS799283_Hapolipoprotein A 1 measurement QTL GWAS799283 (human)7e-10apolipoprotein A 1 measurementblood apolipoprotein AI level (CMO:0000520)155842520258425203Human
1559354LDLPS4_HLow density lipoprotein particle size QTL 4 (human)2.20.019LDL particle size153479023060790230Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS799283_H GCST90019495 Apolipoprotein A1 levels 311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals A NR 7E-10 9.155 rs78936960 0.0273 apolipoprotein A 1 measurement (EFO:0004614)
 PMID:33462484
GWAS872243_H GCST90179148 Low-density lipoprotein levels (MTAG) 361,194 European ancestry individuals A NR 4E-8 7.398 rs78936960 0.01336 low density lipoprotein cholesterol measurement (EFO:0004611)
 PMID:36376304
Database Acc Id Source(s)
GWAS Catalog GCST90019495 GWAS Catalog

RGD Curation Notes
Note Type Note Reference