GWAS798380_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS798380_H (platelet count QTL GWAS798380 (human)) Homo sapiens

Symbol: GWAS798380_H
Name: platelet count QTL GWAS798380 (human)
RGD ID: 407149404
Trait: platelet quantity   (VT:0003179)    
Measurement Type: platelet count   (CMO:0000029)    
LOD Score: Not Available
P Value: 1.0E-26
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh381538,980,363 - 38,980,364RGD_MAPPER_PIPELINEGRCh38
GRCh371539,272,564 - 39,272,565RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Data Annotations    Click to see Annotation Detail View

Clinical Measurement
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS798380_HHumanplatelet count  IAGPrs12708392405850206Based on the EFO term IDGWAS_CATALOGPMID:38064665

Vertebrate Trait
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS798380_HHumanplatelet quantity  IAGPrs12708392405850206Based on the EFO term IDGWAS_CATALOGPMID:38064665

Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS798380_HHumanplatelet count  IAGPrs12708392405850206 GWAS_CATALOGPMID:38064665
Experimental Data Annotations     Click to see Annotation Detail View

Clinical Measurement
platelet count  (IAGP)

Vertebrate Trait

References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
38627269LOC105370777uncharacterized LOC105370777153886480639421060Human

Position Markers

Peak: (rs12708392)
Human AssemblyChrPosition (strand)Source
GRCh381538,980,363 - 38,980,364RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2289410BW327_HBody weight QTL 327 (human)3.320.0001Body fat amount151998012945980129Human
1643273BW330_HBody Weight QTL 330 (human)1.050.014Body weightbody mass index152686671952866719Human
2289430BMD7_HBone mineral density QTL 7 (human)3.320.0001Bone mineral density151998012945980129Human
1559411SCL107_HSerum cholesterol level QTL 107 (human)3.88Lipid leveltriglyceride152654355252543552Human
2299958PRSTS330_HProstate tumor susceptibility QTL 330 (human)1.020.0151Prostate tumor susceptibility153479023060790230Human
407149404GWAS798380_Hplatelet count QTL GWAS798380 (human)1e-26platelet quantity (VT:0003179)platelet count (CMO:0000029)153898036338980364Human
1643523BW284_HBody Weight QTL 284 (human)1.950.0013Body weight152179288947792889Human
1559354LDLPS4_HLow density lipoprotein particle size QTL 4 (human)2.20.019LDL particle size153479023060790230Human
2289420BW314_HBody weight QTL 314 (human)2.720.0003Body weightlean mass151998012945980129Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS798380_H GCST90302225 Platelet count during second trimester of pregnancy 72,816 Chinese ancestry individuals T 0.299528 1E-26 26 rs12708392 0.0667 platelet count (EFO:0004309)
 PMID:38064665
Database Acc Id Source(s)
GWAS Catalog GCST90302225 GWAS Catalog

RGD Curation Notes
Note Type Note Reference