GWAS794640_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS794640_H (systolic blood pressure QTL GWAS794640 (human)) Homo sapiens

Symbol: GWAS794640_H
Name: systolic blood pressure QTL GWAS794640 (human)
RGD ID: 407145664
Trait: systolic blood pressure
Measurement Type: systolic blood pressure   (CMO:0000004)    
LOD Score: Not Available
P Value: 3.0E-13
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh38115,467,418 - 15,467,419RGD_MAPPER_PIPELINEGRCh38
GRCh37115,793,913 - 15,793,914RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Data Annotations    Click to see Annotation Detail View

Clinical Measurement
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS794640_HHumansystolic blood pressure  IAGPrs1042010405850206Based on the EFO term IDGWAS_CATALOGPMID:28739976

Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS794640_HHumansystolic blood pressure  IAGPrs1042010405850206 GWAS_CATALOGPMID:28739976
Experimental Data Annotations     Click to see Annotation Detail View

Clinical Measurement

References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
1602468CELA2Achymotrypsin like elastase 2A11545673215472091Human
38649235LOC105376767uncharacterized LOC10537676711546351515467505Human

Position Markers

Peak: (rs1042010)
Human AssemblyChrPosition (strand)Source
GRCh38115,467,418 - 15,467,419RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1298451OSTEAR17_HOsteoarthritis QTL 17 (human)2.40.0004Joint/bone inflammationosteoarthritis11125188105Human
1576329MYI9_HMyocardial infarction susceptibility QTL 9 (human)12Myocardial infarction susceptibilityearly-onset1758550333585503Human
407145664GWAS794640_Hsystolic blood pressure QTL GWAS794640 (human)3e-13systolic blood pressuresystolic blood pressure (CMO:0000004)11546741815467419Human
407145427GWAS794403_Hsystolic blood pressure QTL GWAS794403 (human)0.0000004systolic blood pressuresystolic blood pressure (CMO:0000004)11546741815467419Human
1298463BP9_HBlood pressure QTL 9 (human)3.9Blood pressurehypertension susceptibility1125188105Human
1576325MYI1_HMyocardial infarction susceptibility QTL 1 (human)11.681e-12Myocardial infarction susceptibilityearly-onset1758550333585503Human
1643380BW316_HBody weight QTL 316 (human)2.620.0002Body weightBMI1758550333585503Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS794403_H GCST004776 Systolic blood pressure 150,134 European ancestry individuals A 0.189 4E-7 6.398 rs1042010 0.498 systolic blood pressure (EFO:0006335)
 PMID:28739976
GWAS794640_H GCST004776 Systolic blood pressure 150,134 European ancestry individuals A 0.189 3E-13 12.523 rs1042010 0.412 systolic blood pressure (EFO:0006335)
 PMID:28739976
Database Acc Id Source(s)
GWAS Catalog GCST004776 GWAS Catalog

RGD Curation Notes
Note Type Note Reference