GWAS790644_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS790644_H (type 2 diabetes mellitus QTL GWAS790644 (human)) Homo sapiens

Symbol: GWAS790644_H
Name: type 2 diabetes mellitus QTL GWAS790644 (human)
RGD ID: 407141668
Trait: type 2 diabetes mellitus
LOD Score: Not Available
P Value: 4.0E-6
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh381589,885,916 - 89,885,917RGD_MAPPER_PIPELINEGRCh38
GRCh371590,429,148 - 90,429,149RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS790644_HHumantype 2 diabetes mellitus  IAGPrs12912009405850206 GWAS_CATALOGPMID:29358691
References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
1350010AP3S2adaptor related protein complex 3 subunit sigma 2158983059989893994Human
5013871ARPIN-AP3S2ARPIN-AP3S2 readthrough158983059989912952Human

Position Markers

Peak: (rs12912009)
Human AssemblyChrPosition (strand)Source
GRCh381589,885,916 - 89,885,917RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
407141668GWAS790644_Htype 2 diabetes mellitus QTL GWAS790644 (human)0.000004type 2 diabetes mellitus158988591689885917Human
407217634GWAS866610_Hprostate carcinoma, type 2 diabetes mellitus QTL GWAS866610 (human)3e-09prostate carcinoma, type 2 diabetes mellitus158988591689885917Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS790644_H GCST005414 Type 2 diabetes 19,693 European ancestry cases, 107,308 European ancestry controls, 6,952 East Asian ancestry cases, 11,865 East Asian ancestry controls, 5,561 South Asian ancestry cases, 14,458 South Asian ancestry controls, 1,804 Mexican ancestry cases, 779 Mexican ancestry controls G NR 0.000004 5.398 rs12912009 1.0840456 PMID:29358691
GWAS866610_H GCST011320 Type 2 diabetes or prostate cancer (pleiotropy) 62,892 European ancestry T2D cases, 79,194 European ancestry PrCa cases, 659,536 European ancestry controls ? NR 3E-9 8.523 rs12912009 N/A prostate carcinoma (EFO:0001663)
 PMID:33290408
Database Acc Id Source(s)
GWAS Catalog GCST005414 GWAS Catalog

RGD Curation Notes
Note Type Note Reference