GWAS790425_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS790425_H (lymphocyte count QTL GWAS790425 (human)) Homo sapiens

Symbol: GWAS790425_H
Name: lymphocyte count QTL GWAS790425 (human)
RGD ID: 407141449
Trait: lymphocyte count
Measurement Type: blood lymphocyte count   (CMO:0000031)    
LOD Score: Not Available
P Value: 4.0E-8
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh384105,166,665 - 105,166,666RGD_MAPPER_PIPELINEGRCh38
GRCh374106,087,822 - 106,087,823RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Data Annotations    Click to see Annotation Detail View

Clinical Measurement
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS790425_HHumanblood lymphocyte count  IAGPrs10022109405850206Based on the EFO term IDGWAS_CATALOGPMID:29403010

Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS790425_HHumanlymphocyte count  IAGPrs10022109405850206 GWAS_CATALOGPMID:29403010
Experimental Data Annotations     Click to see Annotation Detail View

Clinical Measurement

References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
151674199LOC124900868uncharacterized LOC1249008684105137262105171010Human
1606790TET2tet methylcytosine dioxygenase 24105145875105279803Human

Position Markers

Peak: (rs10022109)
Human AssemblyChrPosition (strand)Source
GRCh384105,166,665 - 105,166,666RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
407141449GWAS790425_Hlymphocyte count QTL GWAS790425 (human)4e-08lymphocyte countblood lymphocyte count (CMO:0000031)4105166665105166666Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS790425_H GCST005997 Lymphocyte count 62,076 Japanese ancestry individuals ? NR 4E-8 7.398 rs10022109 0.03203 lymphocyte count (EFO:0004587)
 PMID:29403010
Database Acc Id Source(s)
GWAS Catalog GCST005997 GWAS Catalog

RGD Curation Notes
Note Type Note Reference