GWAS786465_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS786465_H (cognitive decline measurement QTL GWAS786465 (human)) Homo sapiens

Symbol: GWAS786465_H
Name: cognitive decline measurement QTL GWAS786465 (human)
RGD ID: 407137489
Trait: cognitive behavior trait   (VT:0010450)    
LOD Score: Not Available
P Value: 1.0E-7
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh38120,772,323 - 20,772,324RGD_MAPPER_PIPELINEGRCh38
GRCh37121,098,816 - 21,098,817RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Data Annotations    Click to see Annotation Detail View

Vertebrate Trait
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS786465_HHumancognitive behavior trait  IAGPrs55961051405850206Based on the EFO term IDGWAS_CATALOGPMID:26252872

Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS786465_HHumancognitive decline measurement  IAGPrs55961051405850206 GWAS_CATALOGPMID:26252872
Experimental Data Annotations     Click to see Annotation Detail View

Vertebrate Trait

References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
1606796HP1BP3heterochromatin protein 1 binding protein 312074026620787307Human

Position Markers

Peak: (rs55961051)
Human AssemblyChrPosition (strand)Source
GRCh38120,772,323 - 20,772,324RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1298451OSTEAR17_HOsteoarthritis QTL 17 (human)2.40.0004Joint/bone inflammationosteoarthritis11125188105Human
1576329MYI9_HMyocardial infarction susceptibility QTL 9 (human)12Myocardial infarction susceptibilityearly-onset1758550333585503Human
407137489GWAS786465_Hcognitive decline measurement QTL GWAS786465 (human)0.0000001cognitive behavior trait (VT:0010450)12077232320772324Human
1298463BP9_HBlood pressure QTL 9 (human)3.9Blood pressurehypertension susceptibility1125188105Human
1576325MYI1_HMyocardial infarction susceptibility QTL 1 (human)11.681e-12Myocardial infarction susceptibilityearly-onset1758550333585503Human
1643380BW316_HBody weight QTL 316 (human)2.620.0002Body weightBMI1758550333585503Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS786465_H GCST003075 Cognitive decline rate in late mild cognitive impairment 472 European ancestry cases, 47 cases G 0.01 1E-7 7 rs55961051 0.5693 cognitive decline measurement (EFO:0007710)
 PMID:26252872
Database Acc Id Source(s)
GWAS Catalog GCST003075 GWAS Catalog

RGD Curation Notes
Note Type Note Reference