GWAS775309_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS775309_H (celiac disease QTL GWAS775309 (human)) Homo sapiens

Symbol: GWAS775309_H
Name: celiac disease QTL GWAS775309 (human)
RGD ID: 407126333
Trait: celiac disease
LOD Score: Not Available
P Value: 9.0E-8
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh3817,986,612 - 7,986,613RGD_MAPPER_PIPELINEGRCh38
GRCh3718,046,672 - 8,046,673RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS775309_HHumanceliac disease  IAGPrs12727642405850206Based on the EFO term IDGWAS_CATALOGPMID:20190752

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS775309_HHumanCeliac disease  IAGPrs12727642405850206Based on the EFO term IDGWAS_CATALOGPMID:20190752
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS775309_HHumanceliac disease  IAGPrs12727642405850206 GWAS_CATALOGPMID:20190752

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records



Peak: (rs12727642)
Human AssemblyChrPosition (strand)Source
GRCh3817,986,612 - 7,986,613RGD_MAPPER_PIPELINE


The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1298451OSTEAR17_HOsteoarthritis QTL 17 (human)2.40.0004Joint/bone inflammationosteoarthritis11125188105Human
1576329MYI9_HMyocardial infarction susceptibility QTL 9 (human)12Myocardial infarction susceptibilityearly-onset1758550333585503Human
407126333GWAS775309_Hceliac disease QTL GWAS775309 (human)9e-08celiac disease179866127986613Human
1298463BP9_HBlood pressure QTL 9 (human)3.9Blood pressurehypertension susceptibility1125188105Human
1576325MYI1_HMyocardial infarction susceptibility QTL 1 (human)11.681e-12Myocardial infarction susceptibilityearly-onset1758550333585503Human
1643380BW316_HBody weight QTL 316 (human)2.620.0002Body weightBMI1758550333585503Human



Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS775309_H GCST000612 Celiac disease 4,533 European ancestry cases, 10,750 European ancestry controls A 0.19 9E-8 7.046 rs12727642 1.14 celiac disease (EFO:0001060)
 PMID:20190752
Database
Acc Id
Source(s)
GWAS Catalog GCST000612 GWAS Catalog

Note Type Note Reference