GWAS765128_H QTL Report (Homo sapiens) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
QTL Registration

QTL: GWAS765128_H (omega-3 polyunsaturated fatty acid measurement QTL GWAS765128 (human)) Homo sapiens

Symbol: GWAS765128_H
Name: omega-3 polyunsaturated fatty acid measurement QTL GWAS765128 (human)
RGD ID: 407116152
Trait: omega-3 polyunsaturated fatty acid measurement
LOD Score: Not Available
P Value: 3.0E-11
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh381558,388,444 - 58,388,445RGD_MAPPER_PIPELINEGRCh38
GRCh371558,680,643 - 58,680,644RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model




#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records



Peak: (rs35853021)
Human AssemblyChrPosition (strand)Source
GRCh381558,388,444 - 58,388,445RGD_MAPPER_PIPELINE


1 to 10 of 39 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
597443868GWAS1539942_Htriglycerides:total lipids ratio, high density lipoprotein cholesterol measurement QTL GWAS1539942 (human)5e-13triglycerides:total lipids ratio, high density lipoprotein cholesterol measurementblood high density lipoprotein cholesterol level (CMO:0000052)155838844458388445Human
597426014GWAS1522088_Hphosphatidylethanolamine measurement QTL GWAS1522088 (human)3e-19very low density lipoprotein cholesterol measurement, phospholipids:total lipids ratio155838844458388445Human
597416976GWAS1513050_Hlysophosphatidylethanolamine measurement QTL GWAS1513050 (human)7e-14lysophosphatidylethanolamine measurement155838844458388445Human
597428369GWAS1524443_Hphosphatidylcholine measurement QTL GWAS1524443 (human)5e-40phosphatidylcholine measurement155838844458388445Human
597428626GWAS1524700_Hphosphatidylethanolamine measurement QTL GWAS1524700 (human)3e-15phosphatidylethanolamine measurement155838844458388445Human
597396437GWAS1492511_Hphosphatidylethanolamine measurement QTL GWAS1492511 (human)9e-10phosphatidylethanolamine measurement155838844458388445Human
597407561GWAS1503635_Hphosphatidylethanolamine measurement QTL GWAS1503635 (human)2e-12urine ketone body amount (VT:0010724)155838844458388445Human
597528974GWAS1625048_Hlevel of Sphingomyelin (d34:2) in blood serum QTL GWAS1625048 (human)0.0000002level of Sphingomyelin (d34:2) in blood serum155838844458388445Human
2299958PRSTS330_HProstate tumor susceptibility QTL 330 (human)1.020.0151Prostate tumor susceptibility153479023060790230Human
597428554GWAS1524628_Hphosphatidylethanolamine measurement QTL GWAS1524628 (human)5e-29phosphatidylethanolamine measurement155838844458388445Human

1 to 10 of 39 rows


1 to 20 of 47 rows
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1742824_H GCST90315252 KITLG/PLTP protein level ratio 43,509 European ancestry individuals ? NR 1E-55 55 rs35853021 0.111898 KITLG/PLTP protein level ratio in blood (OBA:2055506)
 PMID:38412862
GWAS1755948_H GCST90302159 Phospholipids to total lipids ratio in very small VLDL 4,435 East Asian ancestry individuals, 11,340 South Asian ancestry individuals, 120,241 European ancestry individuals T 0.3815 3E-19 18.523 rs35853021 0.0367 phospholipids:total lipids ratio (EFO:0020946)
blood VLDL cholesterol amount (OBA:VT0005144)
 PMID:38448586
GWAS1470144_H GCST001392 Lipid metabolism phenotypes 8,330 European ancestry individuals ? NR 7E-76 75.155 rs35853021 0.31 lipid measurement (EFO:0004529)
 PMID:22286219
GWAS1492511_H GCST90094888 Phosphatidylethanolamine (36:2) levels 650 Amish individuals T 0.35764 9E-10 9.046 rs35853021 0.3570088 phosphatidylethanolamine measurement (EFO:0010228)
 PMID:35393526
GWAS1503635_H GCST90102099 Phosphatidylethanolamine (34:2) levels 650 Amish individuals T 0.35764 2E-12 11.699 rs35853021 0.40600026 phosphatidylethanolamine measurement (EFO:0010228)
 PMID:35393526
GWAS1503759_H GCST90302083 Free cholesterol in small HDL 4,435 East Asian ancestry individuals, 11,340 South Asian ancestry individuals, 120,241 European ancestry individuals T 0.3814 2E-10 9.699 rs35853021 0.0258 free cholesterol in small HDL measurement (EFO:0022270)
 PMID:38448586
GWAS1503919_H GCST90102101 Phosphatidylethanolamine (36:3) levels 650 Amish individuals T 0.35764 7E-12 11.155 rs35853021 0.40221164 phosphatidylethanolamine measurement (EFO:0010228)
 PMID:35393526
GWAS1503930_H GCST90102106 Phosphatidylethanolamine (38:6) levels 650 Amish individuals T 0.35764 1E-13 13 rs35853021 0.42316476 phosphatidylethanolamine measurement (EFO:0010228)
 PMID:35393526
GWAS1513050_H GCST90060137 Lysophosphatidylethanolamine_16:0_[M-H]1- levels 13,814 British ancestry individuals T NR 7E-14 13.155 rs35853021 0.0834744 lysophosphatidylethanolamine measurement (EFO:0010225)
 PMID:34503513
GWAS1514348_H GCST90060319 Phosphatidylcholine_35:3_[M+H]1+/Phosphatidylethanolamine_38:3_[M+H]1+/Phosphatidate_40:4_[M+NH4]1+ levels 13,814 British ancestry individuals T NR 3E-11 10.523 rs35853021 0.0691858 phosphatidylcholine measurement (EFO:0010226)
 PMID:34503513
GWAS1514666_H GCST90060312 Phosphatidylcholine_35:6_[M+H]1+/Phosphatidylethanolamine_38:6_[M+H]1+/Phosphatidate_40:7_[M+NH4]1+ levels 13,814 British ancestry individuals T NR 7E-98 97.155 rs35853021 0.264751 phosphatidylcholine measurement (EFO:0010226)
 PMID:34503513
GWAS1514675_H GCST90060316 Phosphatidylcholine_35:4_[M+H]1+/Phosphatidylethanolamine_38:4_[M+H]1+/Phosphatidate_40:5_[M+NH4]1+ levels 13,814 British ancestry individuals T NR 1E-108 108 rs35853021 0.26446 phosphatidylcholine measurement (EFO:0010226)
 PMID:34503513
GWAS1521482_H GCST90060310 Phosphatidylethanolamine_38:6_[M-H]1- levels 13,814 British ancestry individuals T NR 2E-105 104.699 rs35853021 0.262365 phosphatidylethanolamine measurement (EFO:0010228)
 PMID:34503513
GWAS1521582_H GCST90060247 Phosphatidylethanolamine_34:2_[M-H]1- levels 13,814 British ancestry individuals T NR 6E-48 47.222 rs35853021 0.172849 phosphatidylethanolamine measurement (EFO:0010228)
 PMID:34503513
None Available GCST90060690 Phosphatidylethanolamine(36:4)_[M+H]1+ levels 5,662 Pakistani ancestry individuals A NR 2E-12 11.699 rs35853021 0.0381 phosphatidylethanolamine measurement (EFO:0010228)
 PMID:34503513
None Available GCST90060689 Phosphatidylethanolamine(36:4)_[M-H]1- levels 5,662 Pakistani ancestry individuals C NR 2E-12 11.699 rs35853021 0.0651 phosphatidylethanolamine measurement (EFO:0010228)
 PMID:34503513
GWAS1522055_H GCST90060199 Diacylglycerol_38:6_[M+H-H2O]1+ levels 13,814 British ancestry individuals T NR 4E-22 21.398 rs35853021 0.100276 diglyceride measurement (EFO:0010223)
 PMID:34503513
GWAS1522088_H GCST90060274 Phosphatidylethanolamine_36:3_[M-H]1- levels 13,814 British ancestry individuals T NR 3E-19 18.523 rs35853021 0.0960977 phosphatidylethanolamine measurement (EFO:0010228)
 PMID:34503513
GWAS1522199_H GCST90060273 Phosphatidylcholine_33:4_[M+H]1+/Phosphatidylethanolamine_36:4_[M+H]1+/Phosphatidate_38:5_[M+NH4]1+ levels 13,814 British ancestry individuals T NR 3E-117 116.523 rs35853021 0.282351 phosphatidylcholine measurement (EFO:0010226)
 PMID:34503513
None Available GCST90060200 Diacylglycerol_38:5_[M+H-H2O]1+ levels 13,814 British ancestry individuals T NR 2E-12 11.699 rs35853021 0.0606503 diacylglycerol 38:5 measurement (EFO:0020067)
 PMID:34503513
1 to 20 of 47 rows
Database
Acc Id
Source(s)
GWAS Catalog GCST90060319 GWAS Catalog
  GCST90091514 GWAS Catalog

Note Type Note Reference