GWAS760926_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS760926_H (waist-hip ratio QTL GWAS760926 (human)) Homo sapiens

Symbol: GWAS760926_H
Name: waist-hip ratio QTL GWAS760926 (human)
RGD ID: 407111950
Trait: waist-hip ratio
Measurement Type: waist to hip ratio (WHR)   (CMO:0000020)    
LOD Score: Not Available
P Value: 1.0E-17
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh3813,056,869 - 3,056,870RGD_MAPPER_PIPELINEGRCh38
GRCh3712,973,433 - 2,973,434RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model




Clinical Measurement
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS760926_HHumanwaist to hip ratio (WHR)  IAGPrs2993481405850206Based on the EFO term IDGWAS_CATALOGPMID:30595370

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS760926_HHumanwaist-hip ratio  IAGPrs2993481405850206 GWAS_CATALOGPMID:30595370

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
151670046LOC124903827translation initiation factor IF-2130554233075562Human


Peak: (rs2993481)
Human AssemblyChrPosition (strand)Source
GRCh3813,056,869 - 3,056,870RGD_MAPPER_PIPELINE


1 to 10 of 10 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1298451OSTEAR17_HOsteoarthritis QTL 17 (human)2.40.0004Joint/bone inflammationosteoarthritis11125188105Human
597257883GWAS1353957_HBMI-adjusted waist-hip ratio QTL GWAS1353957 (human)3e-11body size trait (VT:0100005)130568693056870Human
597029222GWAS1125296_HBMI-adjusted waist-hip ratio QTL GWAS1125296 (human)2e-17body size trait (VT:0100005)130568693056870Human
407070470GWAS719446_Hwaist-hip ratio QTL GWAS719446 (human)5e-08waist-hip ratiowaist to hip ratio (WHR) (CMO:0000020)130568693056870Human
597080385GWAS1176459_Hmonocyte count QTL GWAS1176459 (human)4e-13monocyte quantity (VT:0000223)blood monocyte count (CMO:0000032)130568693056870Human
407111950GWAS760926_Hwaist-hip ratio QTL GWAS760926 (human)1e-17waist-hip ratiowaist to hip ratio (WHR) (CMO:0000020)130568693056870Human
1298463BP9_HBlood pressure QTL 9 (human)3.9Blood pressurehypertension susceptibility1125188105Human
597161531GWAS1257605_HBMI-adjusted waist-hip ratio QTL GWAS1257605 (human)5e-11body size trait (VT:0100005)130568693056870Human
407071341GWAS720317_HBMI-adjusted waist-hip ratio QTL GWAS720317 (human)9e-20body size trait (VT:0100005)130568693056870Human
597047673GWAS1143747_HBMI-adjusted waist-hip ratio QTL GWAS1143747 (human)4e-18body size trait (VT:0100005)130568693056870Human

1 to 10 of 10 rows


Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS760926_H GCST007067 Waist-hip ratio approximately 458,000 European ancestry individuals ? NR 1E-17 17 rs2993481 N/A waist-hip ratio (EFO:0004343)
 PMID:30595370
GWAS1125296_H GCST008994 Waist-to-hip ratio adjusted for BMI 379,501 European ancestry female individuals A 0.6703 2E-17 16.699 rs2993481 0.0195 BMI-adjusted waist-hip ratio (EFO:0007788)
 PMID:30239722
GWAS1143747_H GCST009858 Waist-to-hip ratio adjusted for BMI 457,690 European ancestry individuals ? NR 4E-18 17.398 rs2993481 N/A BMI-adjusted waist-hip ratio (EFO:0007788)
 PMID:31669095
GWAS1176459_H GCST90002393 Monocyte count 408,112 British individuals T 0.187029 4E-13 12.398 rs2993481 0.020602345 monocyte count (EFO:0005091)
 PMID:32888494
GWAS719446_H GCST008734 Waist-hip ratio 663,598 European ancestry individuals T 0.19 5E-8 7.302 rs2993481 N/A waist-hip ratio (EFO:0004343)
 PMID:30575882
GWAS720317_H GCST008733 Waist-to-hip ratio adjusted for BMI 660,648 European ancestry individuals T 0.19 9E-20 19.046 rs2993481 0.021 BMI-adjusted waist-hip ratio (EFO:0007788)
 PMID:30575882
GWAS1257605_H GCST90020027 Waist-hip index 219,872 British ancestry women T NR 5E-11 10.302 rs2993481 0.02369 BMI-adjusted waist-hip ratio (EFO:0007788)
 PMID:34021172
GWAS1353957_H GCST90020025 Waist-to-hip ratio adjusted for BMI 219,872 British ancestry women T NR 3E-11 10.523 rs2993481 0.0239756 BMI-adjusted waist-hip ratio (EFO:0007788)
 PMID:34021172
Database
Acc Id
Source(s)
GWAS Catalog GCST007067 GWAS Catalog

Note Type Note Reference