GWAS753671_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS753671_H (body height QTL GWAS753671 (human)) Homo sapiens

Symbol: GWAS753671_H
Name: body height QTL GWAS753671 (human)
RGD ID: 407104695
Trait: body height   (VT:0001253)    
Measurement Type: body height   (CMO:0000106)    
LOD Score: Not Available
P Value: 1.0E-55
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh381653,447,098 - 53,447,099RGD_MAPPER_PIPELINEGRCh38
GRCh371653,481,010 - 53,481,011RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Data Annotations    Click to see Annotation Detail View

Clinical Measurement
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS753671_HHumanbody height  IAGPrs17800727405850206Based on the EFO term IDGWAS_CATALOGPMID:30595370

Vertebrate Trait
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS753671_HHumanbody height  IAGPrs17800727405850206Based on the EFO term IDGWAS_CATALOGPMID:30595370

Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS753671_HHumanbody height  IAGPrs17800727405850206 GWAS_CATALOGPMID:30595370
Experimental Data Annotations     Click to see Annotation Detail View

Clinical Measurement
body height  (IAGP)

Vertebrate Trait
body height  (IAGP)

References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
733260RBL2RB transcriptional corepressor like 2165343447153491648Human

Position Markers

Peak: (rs17800727)
Human AssemblyChrPosition (strand)Source
GRCh381653,447,098 - 53,447,099RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
406925985GWAS574961_Hbody height QTL GWAS574961 (human)1e-26body height (VT:0001253)body height (CMO:0000106)165344709853447099Human
407104695GWAS753671_Hbody height QTL GWAS753671 (human)1e-55body height (VT:0001253)body height (CMO:0000106)165344709853447099Human
407284264GWAS933240_Hbody height QTL GWAS933240 (human)3e-303body height (VT:0001253)body height (CMO:0000106)165344709853447099Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS574961_H GCST90245844 Height 455,180 Hispanic or Latin American individuals G 0.2321 1E-26 26 rs17800727 0.0273 body height (EFO:0004339)
 PMID:36224396
GWAS753671_H GCST007841 Height approximately 458,000 European ancestry individuals ? NR 1E-55 55 rs17800727 N/A body height (EFO:0004339)
 PMID:30595370
GWAS933240_H GCST90245848 Height 5,314,291 European ancestry, Hispanic or Latin American, East Asian ancestry, African ancestry, South Asian ancestry individuals G 0.274 3E-303 302.523 rs17800727 0.0268 body height (EFO:0004339)
 PMID:36224396
Database Acc Id Source(s)
GWAS Catalog GCST007841 GWAS Catalog

RGD Curation Notes
Note Type Note Reference