GWAS751207_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL: GWAS751207_H (mean corpuscular hemoglobin QTL GWAS751207 (human)) Homo sapiens

Symbol: GWAS751207_H
Name: mean corpuscular hemoglobin QTL GWAS751207 (human)
RGD ID: 407102231
Trait: mean corpuscular hemoglobin
Measurement Type: mean corpuscular hemoglobin   (CMO:0000290)    
LOD Score: Not Available
P Value: 4.0E-13
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh381781,558,634 - 81,558,635RGD_MAPPER_PIPELINEGRCh38
GRCh371779,525,660 - 79,525,661RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model




Clinical Measurement
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS751207_HHumanmean corpuscular hemoglobin  IAGPrs3208787405850206Based on the EFO term IDGWAS_CATALOGPMID:30595370

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS751207_HHumanmean corpuscular hemoglobin  IAGPrs3208787405850206 GWAS_CATALOGPMID:30595370

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
735438NPLOC4NPL4 homolog, ubiquitin recognition factor178155688581637112Human


Peak: (rs3208787)
Human AssemblyChrPosition (strand)Source
GRCh381781,558,634 - 81,558,635RGD_MAPPER_PIPELINE


1 to 10 of 23 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
407115431GWAS764407_Hmean reticulocyte volume QTL GWAS764407 (human)5e-11reticulocyte morphology trait (VT:0002424)mean corpuscular volume (CMO:0000038)178155863481558635Human
407361028GWAS1010004_Herythrocyte count QTL GWAS1010004 (human)3e-13erythrocyte countred blood cell count (CMO:0000025)178155863481558635Human
406993477GWAS642453_Hmean corpuscular hemoglobin concentration QTL GWAS642453 (human)1e-12mean corpuscular hemoglobin concentrationmean corpuscular hemoglobin concentration (CMO:0000291)178155863481558635Human
407043914GWAS692890_Hmean corpuscular volume QTL GWAS692890 (human)7e-12mean corpuscular volumemean corpuscular volume (CMO:0000038)178155863481558635Human
407116460GWAS765436_Hmean corpuscular volume QTL GWAS765436 (human)4e-12mean corpuscular volumemean corpuscular volume (CMO:0000038)178155863481558635Human
407062664GWAS711640_Hred blood cell density measurement QTL GWAS711640 (human)6e-21red blood cell density measurement178155863481558635Human
407389797GWAS1038773_Hobsolete_red blood cell distribution width QTL GWAS1038773 (human)1e-11obsolete_red blood cell distribution widthred blood cell distribution width- standard deviation (CMO:0003232)178155863481558635Human
407173514GWAS822490_Herythrocyte measurement QTL GWAS822490 (human)3e-09erythrocyte measurementred blood cell measurement (CMO:0001356)178155863481558635Human
407405976GWAS1054952_Hobsolete_red blood cell distribution width QTL GWAS1054952 (human)2e-19obsolete_red blood cell distribution widthred blood cell distribution width- standard deviation (CMO:0003232)178155863481558635Human
407088753GWAS737729_Hobsolete_red blood cell distribution width QTL GWAS737729 (human)1e-13obsolete_red blood cell distribution widthred blood cell distribution width- standard deviation (CMO:0003232)178155863481558635Human

1 to 10 of 23 rows


1 to 20 of 23 rows
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS751207_H GCST007068 Mean corpuscular hemoglobin approximately 443,000 European ancestry individuals ? NR 4E-13 12.398 rs3208787 N/A mean corpuscular hemoglobin (EFO:0004527)
PMID:30595370
GWAS544202_H GCST004601 Red blood cell count 172,952 European ancestry individuals G 0.1657 1E-9 9 rs3208787 0.02899962 erythrocyte count (EFO:0004305)
PMID:27863252
None Available GCST004621 Red cell distribution width 171,529 European ancestry individuals G 0.1657 1E-11 11 rs3208787 0.03248959 Red cell distribution width (EFO:0009188)
PMID:27863252
None Available GCST90002369 Red cell distribution width 531,774 European ancestry individuals A 0.835089 2E-19 18.699 rs3208787 0.02421 Red cell distribution width (EFO:0009188)
PMID:32888493
GWAS640680_H GCST90002322 Mean corpuscular hemoglobin 486,823 European ancestry individuals G 0.164102 3E-14 13.523 rs3208787 0.019936 mean corpuscular hemoglobin concentration (EFO:0004528)
PMID:32888493
GWAS642453_H GCST90002326 Mean corpuscular hemoglobin 630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals G 0.21589 1E-12 12 rs3208787 N/A mean corpuscular hemoglobin concentration (EFO:0004528)
PMID:32888493
GWAS643753_H GCST90002334 Mean corpuscular volume 544,127 European ancestry individuals G 0.164161 7E-16 15.155 rs3208787 0.020901 mean corpuscular volume (EFO:0004526)
PMID:32888493
GWAS649292_H GCST90002338 Mean corpuscular volume 696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals G 0.216037 8E-14 13.097 rs3208787 N/A mean corpuscular volume (EFO:0004526)
PMID:32888493
GWAS655273_H GCST90002390 Mean corpuscular hemoglobin 408,112 British individuals G 0.165459 3E-11 10.523 rs3208787 0.019714067 mean corpuscular hemoglobin (EFO:0004527)
PMID:32888494
GWAS667750_H GCST90245846 Height 293,593 African ancestry individuals G 0.38603 8E-10 9.097 rs3208787 0.02064 body height (EFO:0004339)
PMID:36224396
GWAS692890_H GCST90002392 Mean corpuscular volume 408,112 British individuals G 0.165465 7E-12 11.155 rs3208787 0.020873 mean corpuscular volume (EFO:0004526)
PMID:32888494
GWAS711640_H GCST90002363 Red blood cell count 545,203 European ancestry individuals G 0.164168 6E-21 20.222 rs3208787 0.024696 red blood cell density measurement (EFO:0007978)
PMID:32888493
GWAS713861_H GCST90002367 Red blood cell count 727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals G 0.223571 4E-20 19.398 rs3208787 N/A red blood cell density measurement (EFO:0007978)
PMID:32888493
None Available GCST90002372 Red cell distribution width 563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals A 0.82619 5E-17 16.302 rs3208787 N/A Red cell distribution width (EFO:0009188)
PMID:32888493
GWAS755012_H GCST90002403 Red blood cell count 408,112 British individuals G 0.165468 1E-17 17 rs3208787 0.0253987 erythrocyte count (EFO:0004305)
PMID:32888494
None Available GCST007074 Red cell distribution width approximately 445,000 European ancestry individuals ? NR 3E-16 15.523 rs3208787 N/A Red cell distribution width (EFO:0009188)
PMID:30595370
GWAS760775_H GCST007069 Red blood cell count approximately 445,000 European ancestry individuals ? NR 4E-21 20.398 rs3208787 N/A erythrocyte count (EFO:0004305)
PMID:30595370
GWAS764407_H GCST90002396 Mean reticulocyte volume 408,112 British individuals G 0.165539 5E-11 10.302 rs3208787 0.019813158 mean reticulocyte volume (EFO:0010701)
PMID:32888494
GWAS765436_H GCST90002397 Mean spheric corpuscular volume 408,112 British individuals G 0.165588 4E-12 11.398 rs3208787 0.020768747 mean corpuscular volume (EFO:0004526)
PMID:32888494
GWAS822490_H GCST90281211 Red cell distribution width - standard deviation 39,313 European ancestry individuals G 0.1693 3E-9 8.523 rs3208787 0.0554595 erythrocyte measurement (EFO:0005047)
PMID:37596262
1 to 20 of 23 rows
Database
Acc Id
Source(s)
GWAS Catalog GCST007068 GWAS Catalog

Note Type Note Reference