NPLOC4 (NPL4 homolog, ubiquitin recognition factor) - Rat Genome Database

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Gene: NPLOC4 (NPL4 homolog, ubiquitin recognition factor) Homo sapiens
Analyze
Symbol: NPLOC4
Name: NPL4 homolog, ubiquitin recognition factor
RGD ID: 735438
HGNC Page HGNC:18261
Description: Predicted to enable ubiquitin binding activity and ubiquitin protein ligase binding activity. Predicted to contribute to K48-linked polyubiquitin modification-dependent protein binding activity and K63-linked polyubiquitin modification-dependent protein binding activity. Involved in negative regulation of RIG-I signaling pathway; negative regulation of type I interferon production; and proteolysis involved in protein catabolic process. Located in nucleus. Part of UFD1-NPL4 complex and VCP-NPL4-UFD1 AAA ATPase complex.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: FLJ20657; FLJ23742; homolog of yeast nuclear protein localization 4; KIAA1499; NPL4; NPLOC4 ubiquitin recognition factor; nuclear protein localization 4 homolog; nuclear protein localization protein 4 homolog
RGD Orthologs
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381781,556,885 - 81,637,112 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1781,556,887 - 81,648,465 (-)Ensemblhg38GRCh38
GRCh371779,523,911 - 79,604,138 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361777,134,357 - 77,214,543 (-)NCBIBuild 36Build 36hg18NCBI36
Build 341777,134,358 - 77,214,493NCBI
Celera1776,168,272 - 76,249,182 (-)NCBICelera
Cytogenetic Map17q25.3NCBI
HuRef1774,971,514 - 75,050,623 (-)NCBIHuRef
CHM1_11779,610,124 - 79,690,039 (-)NCBICHM1_1
T2T-CHM13v2.01782,474,164 - 82,554,047 (-)NCBIT2T-CHM13v2.0
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-schisandrin B  (ISO)
(1->4)-beta-D-glucan  (ISO)
1,2-dimethylhydrazine  (ISO)
17beta-hydroxy-17-methylestra-4,9,11-trien-3-one  (EXP)
2,2',4,4'-Tetrabromodiphenyl ether  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (ISO)
2-bromohexadecanoic acid  (EXP)
2-hydroxypropanoic acid  (EXP)
2-methylcholine  (EXP)
3-chloropropane-1,2-diol  (ISO)
4,4'-sulfonyldiphenol  (EXP,ISO)
acetamide  (ISO)
acrolein  (EXP)
acrylamide  (EXP)
aflatoxin B1  (EXP)
alpha-pinene  (EXP)
ammonium chloride  (ISO)
arsane  (EXP)
arsenic atom  (EXP)
arsenous acid  (EXP)
beta-lapachone  (EXP)
bisphenol A  (EXP,ISO)
bisphenol F  (EXP,ISO)
butan-1-ol  (EXP)
cadmium atom  (EXP)
cadmium dichloride  (EXP)
CGP 52608  (EXP)
clozapine  (EXP)
cobalt dichloride  (EXP,ISO)
copper(II) sulfate  (EXP)
curcumin  (EXP)
cyproconazole  (ISO)
diarsenic trioxide  (EXP)
Dibutyl phosphate  (EXP)
dibutyl phthalate  (EXP)
doxorubicin  (EXP)
endosulfan  (EXP,ISO)
epoxiconazole  (ISO)
ethanol  (EXP)
flutamide  (ISO)
folic acid  (ISO)
fulvestrant  (EXP)
gold atom  (EXP)
gold(0)  (EXP)
isoniazide  (EXP)
ivermectin  (EXP)
lead(0)  (EXP)
leflunomide  (ISO)
mercury dichloride  (ISO)
nefazodone  (ISO)
nimesulide  (ISO)
nitrates  (ISO)
NMS-873  (EXP)
ozone  (EXP,ISO)
paracetamol  (EXP)
pentachlorophenol  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
phorbol 13-acetate 12-myristate  (EXP)
prochloraz  (ISO)
rac-lactic acid  (EXP)
sodium arsenite  (EXP)
temozolomide  (EXP)
tetrachloromethane  (ISO)
thapsigargin  (ISO)
titanium dioxide  (ISO)
tolcapone  (ISO)
valdecoxib  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10811609   PMID:10819331   PMID:11574150   PMID:12477932   PMID:12644454   PMID:12665801   PMID:14702039   PMID:15371428   PMID:15489334   PMID:16196087   PMID:16234241   PMID:16322459  
PMID:16344560   PMID:16364241   PMID:16751776   PMID:17070805   PMID:17202270   PMID:17331469   PMID:17550899   PMID:17872946   PMID:18586029   PMID:18775313   PMID:19322201   PMID:19615732  
PMID:19818707   PMID:20414249   PMID:20442859   PMID:20463881   PMID:20702414   PMID:20876349   PMID:21486945   PMID:21630459   PMID:21636303   PMID:21645854   PMID:21873635   PMID:21914798  
PMID:22337587   PMID:22412018   PMID:22658674   PMID:22863883   PMID:22939629   PMID:23042607   PMID:23293021   PMID:23333620   PMID:23798571   PMID:24019527   PMID:24160817   PMID:24163370  
PMID:24248593   PMID:24429874   PMID:24457600   PMID:25260751   PMID:25660456   PMID:25752573   PMID:25921289   PMID:25963833   PMID:26112410   PMID:26186194   PMID:26344197   PMID:26389662  
PMID:26471729   PMID:26496610   PMID:26549226   PMID:26638075   PMID:26972000   PMID:27226613   PMID:27762274   PMID:27913212   PMID:28190767   PMID:28320958   PMID:28443643   PMID:28512218  
PMID:28514442   PMID:28515276   PMID:28525741   PMID:28611215   PMID:28675297   PMID:29053956   PMID:29117863   PMID:29208956   PMID:29229926   PMID:29395067   PMID:29540532   PMID:29568061  
PMID:29599191   PMID:30335548   PMID:30344098   PMID:30833792   PMID:31091453   PMID:31164795   PMID:31177093   PMID:31280863   PMID:31300519   PMID:31478661   PMID:31623962   PMID:31722399  
PMID:31732153   PMID:31839598   PMID:32296183   PMID:32416067   PMID:32423001   PMID:32614325   PMID:32667929   PMID:32687490   PMID:32788342   PMID:32807901   PMID:32814053   PMID:33277362  
PMID:33402676   PMID:33417871   PMID:33462405   PMID:33766124   PMID:33845483   PMID:33916271   PMID:33961781   PMID:34079125   PMID:34144977   PMID:34147029   PMID:34262183   PMID:34349018  
PMID:34373451   PMID:34578187   PMID:34599178   PMID:34642328   PMID:34739333   PMID:35256949   PMID:35271311   PMID:35389758   PMID:35509820   PMID:35552390   PMID:35704671   PMID:35831314  
PMID:35920641   PMID:35944360   PMID:35961308   PMID:36087575   PMID:36114006   PMID:36168627   PMID:36180527   PMID:36215168   PMID:36244648   PMID:36300783   PMID:36517590   PMID:36543142  
PMID:37071682   PMID:37167062   PMID:37277335   PMID:37317656   PMID:37689310   PMID:37774976   PMID:37776851   PMID:37788309   PMID:37827155   PMID:37993584   PMID:38777146   PMID:38803224  
PMID:39147351   PMID:39231216  


Genomics

Comparative Map Data
NPLOC4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381781,556,885 - 81,637,112 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1781,556,887 - 81,648,465 (-)Ensemblhg38GRCh38
GRCh371779,523,911 - 79,604,138 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361777,134,357 - 77,214,543 (-)NCBIBuild 36Build 36hg18NCBI36
Build 341777,134,358 - 77,214,493NCBI
Celera1776,168,272 - 76,249,182 (-)NCBICelera
Cytogenetic Map17q25.3NCBI
HuRef1774,971,514 - 75,050,623 (-)NCBIHuRef
CHM1_11779,610,124 - 79,690,039 (-)NCBICHM1_1
T2T-CHM13v2.01782,474,164 - 82,554,047 (-)NCBIT2T-CHM13v2.0
Nploc4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3911120,270,624 - 120,328,526 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl11120,271,196 - 120,328,534 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm3811120,379,798 - 120,437,700 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl11120,380,370 - 120,437,708 (-)Ensemblmm10GRCm38
MGSCv3711120,241,685 - 120,298,982 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv3611120,196,461 - 120,253,758 (-)NCBIMGSCv36mm8
Celera11132,115,124 - 132,172,461 (-)NCBICelera
Cytogenetic Map11E2NCBI
cM Map1184.09NCBI
Nploc4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr810106,152,756 - 106,208,306 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl10106,153,173 - 106,208,264 (-)EnsemblGRCr8
mRatBN7.210105,654,395 - 105,709,958 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl10105,654,812 - 105,709,913 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx10110,759,179 - 110,814,263 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.010110,222,198 - 110,277,289 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.010105,575,294 - 105,630,381 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.010109,553,518 - 109,610,087 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl10109,552,649 - 109,610,030 (-)Ensemblrn6Rnor6.0
Rnor_5.010109,148,086 - 109,198,162 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.410109,809,121 - 109,878,278 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera10104,200,159 - 104,255,207 (-)NCBICelera
RGSC_v3.110109,825,236 - 109,862,213 (-)NCBI
Cytogenetic Map10q32.3NCBI
Nploc4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555061,451,337 - 1,513,455 (+)Ensembl
ChiLan1.0NW_0049555061,451,337 - 1,513,455 (+)NCBIChiLan1.0ChiLan1.0
NPLOC4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21998,143,491 - 98,223,643 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan117103,043,770 - 103,123,943 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01776,012,756 - 76,092,901 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11781,713,582 - 81,785,567 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1781,713,582 - 81,788,714 (-)EnsemblpanPan2panpan1.1
NPLOC4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.19538,087 - 604,898 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl9537,840 - 603,480 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha91,142,086 - 1,207,840 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.091,133,445 - 1,199,269 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl91,131,519 - 1,198,105 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.191,158,270 - 1,223,977 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.091,284,872 - 1,349,805 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.091,363,947 - 1,429,700 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Nploc4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244056021,158,248 - 1,205,737 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365945,205,659 - 5,251,026 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049365945,206,222 - 5,251,042 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NPLOC4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl121,251,053 - 1,285,666 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1121,251,377 - 1,285,668 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2121,102,565 - 1,128,796 (+)NCBISscrofa10.2Sscrofa10.2susScr3
NPLOC4
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11673,499,737 - 73,570,753 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1673,502,123 - 73,570,710 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366607744,881,353 - 44,976,051 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Nploc4
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462480110,533,064 - 10,589,096 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462480110,531,107 - 10,589,502 (-)NCBIHetGla 1.0HetGla 1.0hetGla2

Variants

.
Variants in NPLOC4
52 total Variants

Clinical Variants
Name Type Condition(s) Position(s) Clinical significance
GRCh38/hg38 17q25.3(chr17:78901959-83086677)x3 copy number gain See cases [RCV000050934] Chr17:78901959..83086677 [GRCh38]
Chr17:76898041..81044553 [GRCh37]
Chr17:74409636..78637842 [NCBI36]
Chr17:17q25.3		 pathogenic
GRCh38/hg38 17q25.3(chr17:78092236-83086677)x3 copy number gain See cases [RCV000050685] Chr17:78092236..83086677 [GRCh38]
Chr17:76088317..81044553 [GRCh37]
Chr17:73599912..78637842 [NCBI36]
Chr17:17q25.3		 pathogenic
GRCh38/hg38 17q24.3-25.3(chr17:69209079-83086677)x3 copy number gain See cases [RCV000052486] Chr17:69209079..83086677 [GRCh38]
Chr17:67205220..81044553 [GRCh37]
Chr17:64716815..78637842 [NCBI36]
Chr17:17q24.3-25.3		 pathogenic
GRCh38/hg38 17q25.3(chr17:78918650-83021095)x3 copy number gain See cases [RCV000052497] Chr17:78918650..83021095 [GRCh38]
Chr17:76914732..80978971 [GRCh37]
Chr17:74426327..78572260 [NCBI36]
Chr17:17q25.3		 pathogenic
GRCh38/hg38 17q23.2-25.3(chr17:36449220-83086677)x3 copy number gain Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000052483]|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000052483]|See cases [RCV000052483] Chr17:36449220..83086677 [GRCh38]
Chr17:58617905..81044553 [GRCh37]
Chr17:55972687..78637842 [NCBI36]
Chr17:17q23.2-25.3		 pathogenic
GRCh38/hg38 17q25.3(chr17:80328106-83086677)x1 copy number loss Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000053454]|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000053454]|See cases [RCV000053454] Chr17:80328106..83086677 [GRCh38]
Chr17:78301906..81044553 [GRCh37]
Chr17:75916501..78637842 [NCBI36]
Chr17:17q25.3		 pathogenic
GRCh38/hg38 17q25.3(chr17:81008196-83102584)x3 copy number gain See cases [RCV000138688] Chr17:81008196..83102584 [GRCh38]
Chr17:78981996..81048189 [GRCh37]
Chr17:76596591..78653749 [NCBI36]
Chr17:17q25.3		 pathogenic
GRCh38/hg38 17q25.3(chr17:81401966-83084062)x1 copy number loss See cases [RCV000142007] Chr17:81401966..83084062 [GRCh38]
Chr17:79375766..81041938 [GRCh37]
Chr17:76990361..78635227 [NCBI36]
Chr17:17q25.3		 likely pathogenic
GRCh38/hg38 17q24.3-25.3(chr17:69916435-83102552)x3 copy number gain See cases [RCV000143342] Chr17:69916435..83102552 [GRCh38]
Chr17:67912576..81048189 [GRCh37]
Chr17:65424171..78653717 [NCBI36]
Chr17:17q24.3-25.3		 pathogenic
GRCh37/hg19 17q25.3(chr17:78514452-81041938)x1 copy number loss See cases [RCV000449416] Chr17:78514452..81041938 [GRCh37]
Chr17:17q25.3		 pathogenic
GRCh37/hg19 17q25.1-25.3(chr17:73951701-81041938)x3 copy number gain See cases [RCV000447539] Chr17:73951701..81041938 [GRCh37]
Chr17:17q25.1-25.3		 pathogenic
GRCh37/hg19 17q24.2-25.3(chr17:64241326-81041938)x3 copy number gain See cases [RCV000447577] Chr17:64241326..81041938 [GRCh37]
Chr17:17q24.2-25.3		 pathogenic
GRCh37/hg19 17q25.3(chr17:79518741-79601555)x1 copy number loss See cases [RCV000446184] Chr17:79518741..79601555 [GRCh37]
Chr17:17q25.3		 benign
GRCh37/hg19 17q21.31-25.3(chr17:42580684-81085615)x3 copy number gain See cases [RCV000447823] Chr17:42580684..81085615 [GRCh37]
Chr17:17q21.31-25.3		 pathogenic
GRCh37/hg19 17p13.3-q25.3(chr17:526-81041938) copy number gain See cases [RCV000511439] Chr17:526..81041938 [GRCh37]
Chr17:17p13.3-q25.3		 pathogenic
GRCh37/hg19 17q25.1-25.3(chr17:73951701-81041938)x3 copy number gain See cases [RCV000510919] Chr17:73951701..81041938 [GRCh37]
Chr17:17q25.1-25.3		 pathogenic
NM_017921.4(NPLOC4):c.142A>C (p.Ile48Leu) single nucleotide variant not specified [RCV004311120] Chr17:81622233 [GRCh38]
Chr17:79589259 [GRCh37]
Chr17:17q25.3		 uncertain significance
GRCh37/hg19 17p13.3-q25.3(chr17:526-81041938)x3 copy number gain See cases [RCV000512441] Chr17:526..81041938 [GRCh37]
Chr17:17p13.3-q25.3		 pathogenic
GRCh37/hg19 17q24.2-25.3(chr17:67002415-81041938)x3 copy number gain See cases [RCV000512573] Chr17:67002415..81041938 [GRCh37]
Chr17:17q24.2-25.3		 pathogenic
GRCh37/hg19 17q24.1-25.3(chr17:63689671-81041938)x3 copy number gain not provided [RCV000683952] Chr17:63689671..81041938 [GRCh37]
Chr17:17q24.1-25.3		 pathogenic
GRCh37/hg19 17q25.3(chr17:76552611-81041938)x3 copy number gain not provided [RCV000683965] Chr17:76552611..81041938 [GRCh37]
Chr17:17q25.3		 likely pathogenic
GRCh37/hg19 17p13.3-q25.3(chr17:8547-81060040)x3 copy number gain not provided [RCV000739324] Chr17:8547..81060040 [GRCh37]
Chr17:17p13.3-q25.3		 pathogenic
GRCh37/hg19 17p13.3-q25.3(chr17:7214-81058310)x3 copy number gain not provided [RCV000739320] Chr17:7214..81058310 [GRCh37]
Chr17:17p13.3-q25.3		 pathogenic
GRCh37/hg19 17p13.3-q25.3(chr17:12344-81057996)x3 copy number gain not provided [RCV000739325] Chr17:12344..81057996 [GRCh37]
Chr17:17p13.3-q25.3		 pathogenic
NM_017921.4(NPLOC4):c.1680C>T (p.Gly560=) single nucleotide variant not provided [RCV000970798] Chr17:81559406 [GRCh38]
Chr17:79526432 [GRCh37]
Chr17:17q25.3		 benign
NM_017921.4(NPLOC4):c.1323G>T (p.Arg441=) single nucleotide variant not provided [RCV000972606] Chr17:81572047 [GRCh38]
Chr17:79539073 [GRCh37]
Chr17:17q25.3		 benign
NM_017921.4(NPLOC4):c.1690C>G (p.Pro564Ala) single nucleotide variant not provided [RCV000949016] Chr17:81559396 [GRCh38]
Chr17:79526422 [GRCh37]
Chr17:17q25.3		 likely benign
GRCh37/hg19 17q25.3(chr17:79496613-79693150)x3 copy number gain not provided [RCV000848240] Chr17:79496613..79693150 [GRCh37]
Chr17:17q25.3		 uncertain significance
GRCh37/hg19 17q25.3(chr17:79531886-79685043)x1 copy number loss not provided [RCV000846802] Chr17:79531886..79685043 [GRCh37]
Chr17:17q25.3		 uncertain significance
GRCh37/hg19 17q24.1-25.3(chr17:62778720-81041938)x3 copy number gain not provided [RCV000849900] Chr17:62778720..81041938 [GRCh37]
Chr17:17q24.1-25.3		 pathogenic
GRCh37/hg19 17q25.3(chr17:78608912-81041938)x3 copy number gain not provided [RCV000848418] Chr17:78608912..81041938 [GRCh37]
Chr17:17q25.3		 pathogenic
NM_017921.4(NPLOC4):c.1733C>T (p.Thr578Met) single nucleotide variant not provided [RCV000957695] Chr17:81559353 [GRCh38]
Chr17:79526379 [GRCh37]
Chr17:17q25.3		 benign
NC_000017.10:g.(?_79477716)_(80900339_?)dup duplication not provided [RCV003122586] Chr17:79477716..80900339 [GRCh37]
Chr17:17q25.3		 uncertain significance
GRCh37/hg19 17q25.1-25.3(chr17:73481509-81043199)x3 copy number gain not provided [RCV002276051] Chr17:73481509..81043199 [GRCh37]
Chr17:17q25.1-25.3		 pathogenic
NM_017921.4(NPLOC4):c.1377T>G (p.Asp459Glu) single nucleotide variant not specified [RCV004219851] Chr17:81569088 [GRCh38]
Chr17:79536114 [GRCh37]
Chr17:17q25.3		 uncertain significance
NM_017921.4(NPLOC4):c.415G>A (p.Val139Met) single nucleotide variant not specified [RCV004189892] Chr17:81610230 [GRCh38]
Chr17:79577256 [GRCh37]
Chr17:17q25.3		 uncertain significance
NM_017921.4(NPLOC4):c.1708G>A (p.Gly570Ser) single nucleotide variant not specified [RCV004144990] Chr17:81559378 [GRCh38]
Chr17:79526404 [GRCh37]
Chr17:17q25.3		 uncertain significance
NM_017921.4(NPLOC4):c.304G>A (p.Ala102Thr) single nucleotide variant not specified [RCV004092709] Chr17:81613400 [GRCh38]
Chr17:79580426 [GRCh37]
Chr17:17q25.3		 uncertain significance
NM_017921.4(NPLOC4):c.1797C>G (p.His599Gln) single nucleotide variant not specified [RCV004238973] Chr17:81559289 [GRCh38]
Chr17:79526315 [GRCh37]
Chr17:17q25.3		 uncertain significance
NM_017921.4(NPLOC4):c.355G>A (p.Gly119Arg) single nucleotide variant not specified [RCV004206571] Chr17:81613349 [GRCh38]
Chr17:79580375 [GRCh37]
Chr17:17q25.3		 uncertain significance
NM_017921.4(NPLOC4):c.1711G>A (p.Ala571Thr) single nucleotide variant not specified [RCV004240234] Chr17:81559375 [GRCh38]
Chr17:79526401 [GRCh37]
Chr17:17q25.3		 uncertain significance
NM_017921.4(NPLOC4):c.146A>G (p.Asn49Ser) single nucleotide variant not specified [RCV004084299] Chr17:81622229 [GRCh38]
Chr17:79589255 [GRCh37]
Chr17:17q25.3		 uncertain significance
NM_017921.4(NPLOC4):c.293A>G (p.Lys98Arg) single nucleotide variant not specified [RCV004218257] Chr17:81613411 [GRCh38]
Chr17:79580437 [GRCh37]
Chr17:17q25.3		 uncertain significance
NM_017921.4(NPLOC4):c.1070T>C (p.Leu357Pro) single nucleotide variant not specified [RCV004148767] Chr17:81596166 [GRCh38]
Chr17:79563192 [GRCh37]
Chr17:17q25.3		 uncertain significance
NM_017921.4(NPLOC4):c.1429G>A (p.Asp477Asn) single nucleotide variant not specified [RCV004170807] Chr17:81569036 [GRCh38]
Chr17:79536062 [GRCh37]
Chr17:17q25.3		 uncertain significance
NM_017921.4(NPLOC4):c.447G>C (p.Glu149Asp) single nucleotide variant not specified [RCV004078843] Chr17:81608811 [GRCh38]
Chr17:79575837 [GRCh37]
Chr17:17q25.3		 uncertain significance
Single allele deletion See cases [RCV003154621] Chr17:79539041..81052322 [GRCh37]
Chr17:17q25.3		 pathogenic
NM_017921.4(NPLOC4):c.1508C>T (p.Thr503Ile) single nucleotide variant not specified [RCV004277092] Chr17:81567475 [GRCh38]
Chr17:79534501 [GRCh37]
Chr17:17q25.3		 uncertain significance
GRCh37/hg19 17q25.3(chr17:79128754-80092824)x1 copy number loss not provided [RCV003483326] Chr17:79128754..80092824 [GRCh37]
Chr17:17q25.3		 likely pathogenic
NM_017921.4(NPLOC4):c.697G>A (p.Val233Ile) single nucleotide variant not specified [RCV004491062] Chr17:81604685 [GRCh38]
Chr17:79571711 [GRCh37]
Chr17:17q25.3		 uncertain significance
NM_017921.4(NPLOC4):c.1394C>A (p.Ser465Tyr) single nucleotide variant not specified [RCV004268485] Chr17:81569071 [GRCh38]
Chr17:79536097 [GRCh37]
Chr17:17q25.3		 uncertain significance
NM_017921.4(NPLOC4):c.1657G>A (p.Glu553Lys) single nucleotide variant not specified [RCV004491055] Chr17:81565517 [GRCh38]
Chr17:79532543 [GRCh37]
Chr17:17q25.3		 uncertain significance
NM_017921.4(NPLOC4):c.198G>C (p.Leu66Phe) single nucleotide variant not specified [RCV004491056] Chr17:81622177 [GRCh38]
Chr17:79589203 [GRCh37]
Chr17:17q25.3		 uncertain significance
NM_017921.4(NPLOC4):c.59C>T (p.Ala20Val) single nucleotide variant not specified [RCV004491059] Chr17:81629762 [GRCh38]
Chr17:79596788 [GRCh37]
Chr17:17q25.3		 uncertain significance
NM_017921.4(NPLOC4):c.634G>A (p.Ala212Thr) single nucleotide variant not specified [RCV004491060] Chr17:81606711 [GRCh38]
Chr17:79573737 [GRCh37]
Chr17:17q25.3		 uncertain significance
NM_017921.4(NPLOC4):c.284C>T (p.Pro95Leu) single nucleotide variant not specified [RCV004491057] Chr17:81613420 [GRCh38]
Chr17:79580446 [GRCh37]
Chr17:17q25.3		 likely benign
NM_017921.4(NPLOC4):c.641C>T (p.Thr214Met) single nucleotide variant not specified [RCV004491061] Chr17:81606704 [GRCh38]
Chr17:79573730 [GRCh37]
Chr17:17q25.3		 uncertain significance
NC_000017.10:g.(?_79477716)_(80901020_?)dup duplication not provided [RCV004581372] Chr17:79477716..80901020 [GRCh37]
Chr17:17q25.3		 uncertain significance
NM_017921.4(NPLOC4):c.1285G>A (p.Val429Ile) single nucleotide variant not specified [RCV004650308] Chr17:81572085 [GRCh38]
Chr17:79539111 [GRCh37]
Chr17:17q25.3		 likely benign
NM_017921.4(NPLOC4):c.1727C>T (p.Thr576Ile) single nucleotide variant not specified [RCV004650307] Chr17:81559359 [GRCh38]
Chr17:79526385 [GRCh37]
Chr17:17q25.3		 uncertain significance
NM_017921.4(NPLOC4):c.1036G>T (p.Asp346Tyr) single nucleotide variant not specified [RCV004838088] Chr17:81596200 [GRCh38]
Chr17:79563226 [GRCh37]
Chr17:17q25.3		 uncertain significance
NM_017921.4(NPLOC4):c.1724C>G (p.Ser575Cys) single nucleotide variant not specified [RCV004832477] Chr17:81559362 [GRCh38]
Chr17:79526388 [GRCh37]
Chr17:17q25.3		 uncertain significance
NM_017921.4(NPLOC4):c.815C>T (p.Ala272Val) single nucleotide variant not specified [RCV004838084] Chr17:81604567 [GRCh38]
Chr17:79571593 [GRCh37]
Chr17:17q25.3		 uncertain significance
NM_017921.4(NPLOC4):c.1066C>T (p.Arg356Trp) single nucleotide variant not specified [RCV004838085] Chr17:81596170 [GRCh38]
Chr17:79563196 [GRCh37]
Chr17:17q25.3		 uncertain significance
NM_017921.4(NPLOC4):c.1178C>T (p.Ala393Val) single nucleotide variant not specified [RCV004838086] Chr17:81589047 [GRCh38]
Chr17:79556073 [GRCh37]
Chr17:17q25.3		 uncertain significance
NM_017921.4(NPLOC4):c.916C>T (p.Arg306Trp) single nucleotide variant not specified [RCV004838087] Chr17:81600346 [GRCh38]
Chr17:79567372 [GRCh37]
Chr17:17q25.3		 uncertain significance
NM_017921.4(NPLOC4):c.916C>G (p.Arg306Gly) single nucleotide variant not specified [RCV004838083] Chr17:81600346 [GRCh38]
Chr17:79567372 [GRCh37]
Chr17:17q25.3		 uncertain significance
NM_017921.4(NPLOC4):c.1723T>A (p.Ser575Thr) single nucleotide variant not specified [RCV004832476] Chr17:81559363 [GRCh38]
Chr17:79526389 [GRCh37]
Chr17:17q25.3		 uncertain significance
NM_017921.4(NPLOC4):c.1817C>G (p.Pro606Arg) single nucleotide variant not specified [RCV005379295] Chr17:81559269 [GRCh38]
Chr17:79526295 [GRCh37]
Chr17:17q25.3		 uncertain significance
NM_017921.4(NPLOC4):c.1783C>G (p.Pro595Ala) single nucleotide variant not specified [RCV005379293] Chr17:81559303 [GRCh38]
Chr17:79526329 [GRCh37]
Chr17:17q25.3		 uncertain significance
NM_017921.4(NPLOC4):c.1654A>G (p.Ile552Val) single nucleotide variant not specified [RCV005379294] Chr17:81565520 [GRCh38]
Chr17:79532546 [GRCh37]
Chr17:17q25.3		 uncertain significance
NM_017921.4(NPLOC4):c.397G>A (p.Gly133Ser) single nucleotide variant not specified [RCV005379292] Chr17:81610248 [GRCh38]
Chr17:79577274 [GRCh37]
Chr17:17q25.3		 uncertain significance
NM_017921.4(NPLOC4):c.1732A>G (p.Thr578Ala) single nucleotide variant not specified [RCV005379296] Chr17:81559354 [GRCh38]
Chr17:79526380 [GRCh37]
Chr17:17q25.3		 likely benign
NM_017921.4(NPLOC4):c.1714G>A (p.Val572Ile) single nucleotide variant not specified [RCV005387730] Chr17:81559372 [GRCh38]
Chr17:79526398 [GRCh37]
Chr17:17q25.3		 uncertain significance
NM_017921.4(NPLOC4):c.1060A>G (p.Met354Val) single nucleotide variant not specified [RCV005387731] Chr17:81596176 [GRCh38]
Chr17:79563202 [GRCh37]
Chr17:17q25.3		 uncertain significance
NM_017921.4(NPLOC4):c.1597C>T (p.Arg533Trp) single nucleotide variant not specified [RCV004838081] Chr17:81565577 [GRCh38]
Chr17:79532603 [GRCh37]
Chr17:17q25.3		 uncertain significance
NM_017921.4(NPLOC4):c.450C>G (p.Asp150Glu) single nucleotide variant not specified [RCV004838082] Chr17:81608808 [GRCh38]
Chr17:79575834 [GRCh37]
Chr17:17q25.3		 uncertain significance
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:8526
Count of miRNA genes:1413
Interacting mature miRNAs:1904
Transcripts:ENST00000331134, ENST00000374747, ENST00000539314, ENST00000570300, ENST00000570324, ENST00000571562, ENST00000571714, ENST00000572346, ENST00000572351, ENST00000572760, ENST00000572824, ENST00000573212, ENST00000573328, ENST00000573519, ENST00000573876, ENST00000574095, ENST00000574344, ENST00000574897, ENST00000574964, ENST00000576713, ENST00000576940
Prediction methods:Microtar, Miranda, Pita, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
596959249GWAS1078768_Hglomerular filtration rate QTL GWAS1078768 (human)2e-10glomerular filtration rate178161920181619202Human
597599640GWAS1656500_Hmean corpuscular hemoglobin concentration QTL GWAS1656500 (human)1e-15erythrocyte hemoglobin amount (VT:0010953)mean corpuscular hemoglobin concentration (CMO:0000291)178155863481558635Human
406993477GWAS642453_Hmean corpuscular hemoglobin concentration QTL GWAS642453 (human)1e-12erythrocyte hemoglobin amount (VT:0010953)mean corpuscular hemoglobin concentration (CMO:0000291)178155863481558635Human
597292049GWAS1388123_HProgressive visual loss QTL GWAS1388123 (human)2e-26Progressive visual loss178159001781590018Human
596960414GWAS1079933_Hglomerular filtration rate QTL GWAS1079933 (human)9e-15glomerular filtration rate178161920181619202Human
597617556GWAS1674416_Hamblyopia QTL GWAS1674416 (human)2e-28amblyopia178163680581636806Human
597163932GWAS1260006_Hcataract QTL GWAS1260006 (human)1e-13cataract178161634581616346Human
597113115GWAS1209189_HRed cell distribution width QTL GWAS1209189 (human)1e-13erythrocyte size trait (VT:0000248)red blood cell distribution width- standard deviation (CMO:0003232)178155863481558635Human
597238933GWAS1335007_Hretinal vasculature measurement QTL GWAS1335007 (human)0.0000003retina blood vessel morphology trait (VT:0002792)178159790481597905Human
597146778GWAS1242852_Hphotoreceptor cell layer thickness measurement QTL GWAS1242852 (human)5e-12retinal photoreceptor layer morphology trait (VT:0003728)178162380981623810Human
596950938GWAS1070457_HRed cell distribution width QTL GWAS1070457 (human)2e-19Red cell distribution width178155863481558635Human
407383898GWAS1032874_Hobsolete_red blood cell distribution width QTL GWAS1032874 (human)5e-17obsolete_red blood cell distribution width178155863481558635Human
597275789GWAS1371863_Hage-related hearing impairment QTL GWAS1371863 (human)2e-09hearing physiology trait (VT:0002104)178161835981618360Human
597608710GWAS1665570_Hbenign neoplasm of eye QTL GWAS1665570 (human)1e-36benign neoplasm of eye178159171581591716Human
406991704GWAS640680_Hmean corpuscular hemoglobin concentration QTL GWAS640680 (human)3e-14erythrocyte hemoglobin amount (VT:0010953)mean corpuscular hemoglobin concentration (CMO:0000291)178155863481558635Human
596956047GWAS1075566_HProgressive visual loss QTL GWAS1075566 (human)2e-26Progressive visual loss178159001781590018Human
597604096GWAS1660956_Herythrocyte count QTL GWAS1660956 (human)2e-12erythrocyte countred blood cell count (CMO:0000025)178155863481558635Human
597606844GWAS1663704_HRed cell distribution width QTL GWAS1663704 (human)2e-26erythrocyte size trait (VT:0000248)red blood cell distribution width- standard deviation (CMO:0003232)178155863481558635Human
597193531GWAS1289605_Hbody mass index QTL GWAS1289605 (human)4e-08body size trait (VT:0100005)body mass index (BMI) (CMO:0000105)178162978581629786Human
407057511GWAS706487_Hcentral corneal thickness QTL GWAS706487 (human)5e-11cornea thickness trait (VT:0005543)178160522781605228Human
597109299GWAS1205373_Hself reported educational attainment QTL GWAS1205373 (human)4e-10self reported educational attainment178161010181610102Human
597223743GWAS1319817_Hcataract QTL GWAS1319817 (human)1e-42cataract178163680581636806Human
597113535GWAS1209609_Herythrocyte count QTL GWAS1209609 (human)1e-17erythrocyte countred blood cell count (CMO:0000025)178155863481558635Human
597599669GWAS1656529_Hmean corpuscular hemoglobin concentration QTL GWAS1656529 (human)8e-13erythrocyte hemoglobin amount (VT:0010953)mean corpuscular hemoglobin concentration (CMO:0000291)178155863481558635Human
597090874GWAS1186948_HRed cell distribution width QTL GWAS1186948 (human)2e-19erythrocyte size trait (VT:0000248)red blood cell count (CMO:0000025)178155863481558635Human
407389797GWAS1038773_Hobsolete_red blood cell distribution width QTL GWAS1038773 (human)1e-11obsolete_red blood cell distribution width178155863481558635Human
596976440GWAS1095959_HRed cell distribution width QTL GWAS1095959 (human)1e-13Red cell distribution width178155863481558635Human
407088753GWAS737729_Hobsolete_red blood cell distribution width QTL GWAS737729 (human)1e-13obsolete_red blood cell distribution width178155863481558635Human
407111799GWAS760775_Herythrocyte count QTL GWAS760775 (human)4e-21erythrocyte countred blood cell count (CMO:0000025)178155863481558635Human
597046690GWAS1142764_HRed cell distribution width QTL GWAS1142764 (human)3e-16erythrocyte hemoglobin amount (VT:0010953)mean corpuscular hemoglobin concentration (CMO:0000291)178155863481558635Human
407026804GWAS675780_Heye color QTL GWAS675780 (human)9e-14iris pigmentation trait (VT:0005102)178162978581629786Human
596953763GWAS1073282_HRed cell distribution width QTL GWAS1073282 (human)5e-17Red cell distribution width178155863481558635Human
597111983GWAS1208057_Hintraocular pressure measurement QTL GWAS1208057 (human)7e-12intraocular pressure (VT:0005257)178159001781590018Human
597253153GWAS1349227_Hnon-melanoma skin carcinoma QTL GWAS1349227 (human)0.000003non-melanoma skin carcinoma178162221681622217Human
597615015GWAS1671875_HRed cell distribution width QTL GWAS1671875 (human)2e-16erythrocyte size trait (VT:0000248)red blood cell distribution width- standard deviation (CMO:0003232)178155863481558635Human
597079213GWAS1175287_Hmean corpuscular hemoglobin QTL GWAS1175287 (human)3e-11erythrocyte hemoglobin amount (VT:0010953)mean corpuscular hemoglobin (CMO:0000290)178155863481558635Human
597024809GWAS1120883_Herythrocyte count QTL GWAS1120883 (human)1e-09erythrocyte countred blood cell count (CMO:0000025)178155863481558635Human
597265573GWAS1361647_Hcup-to-disc ratio measurement QTL GWAS1361647 (human)3e-09optic disc morphology trait (VT:0006215)178163503781635038Human
597613600GWAS1670460_HRed cell distribution width QTL GWAS1670460 (human)2e-18erythrocyte size trait (VT:0000248)red blood cell distribution width- standard deviation (CMO:0003232)178155863481558635Human
407384183GWAS1033159_Hobsolete_red blood cell distribution width QTL GWAS1033159 (human)3e-16obsolete_red blood cell distribution width178155863481558635Human
597208537GWAS1304611_Hmathematical ability QTL GWAS1304611 (human)8e-12cognitive behavior trait (VT:0010450)178157578781575788Human
597604447GWAS1661307_HRed cell distribution width QTL GWAS1661307 (human)4e-18erythrocyte size trait (VT:0000248)red blood cell distribution width- standard deviation (CMO:0003232)178155863481558635Human
597091412GWAS1187486_Hatrophic macular degeneration, age-related macular degeneration, wet macular degeneration QTL GWAS1187486 (human)2e-11retina integrity trait (VT:0010771)178155979581559796Human
597462366GWAS1558440_Hretinal vasculature measurement QTL GWAS1558440 (human)1e-08retina blood vessel morphology trait (VT:0002792)178156396781563968Human
597079637GWAS1175711_HRed cell distribution width QTL GWAS1175711 (human)5e-17erythrocyte size trait (VT:0000248)red blood cell distribution width- standard deviation (CMO:0003232)178155863481558635Human
597174239GWAS1270313_Hvisual acuity measurement QTL GWAS1270313 (human)2e-08visual acuity trait (VT:0002001)178159751681597517Human
597275102GWAS1371176_Hage-related macular degeneration, COVID-19 QTL GWAS1371176 (human)2e-12retina integrity trait (VT:0010771)178155979581559796Human
597115742GWAS1211816_Hmathematical ability QTL GWAS1211816 (human)3e-11cognitive behavior trait (VT:0010450)178157578781575788Human
597276880GWAS1372954_Hage-related macular degeneration, COVID-19 QTL GWAS1372954 (human)3e-12retina integrity trait (VT:0010771)178155979581559796Human
597606615GWAS1663475_Herythrocyte count QTL GWAS1663475 (human)5e-16erythrocyte countred blood cell count (CMO:0000025)178155863481558635Human
597044828GWAS1140902_Hrefractive error QTL GWAS1140902 (human)7e-19refractive error178157181581571816Human
597308501GWAS1404575_Herythrocyte count QTL GWAS1404575 (human)3e-13erythrocyte countred blood cell count (CMO:0000025)178155863481558635Human
407405976GWAS1054952_Hobsolete_red blood cell distribution width QTL GWAS1054952 (human)2e-19obsolete_red blood cell distribution width178155863481558635Human
597319370GWAS1415444_Hrefractive error QTL GWAS1415444 (human)5e-16refractive error178157181581571816Human
596977734GWAS1097253_HRed cell distribution width QTL GWAS1097253 (human)8e-09Red cell distribution width178155863481558635Human
597221195GWAS1317269_Hcataract QTL GWAS1317269 (human)2e-18cataract178161126181611262Human
407102231GWAS751207_Hmean corpuscular hemoglobin QTL GWAS751207 (human)4e-13erythrocyte hemoglobin amount (VT:0010953)mean corpuscular hemoglobin (CMO:0000290)178155863481558635Human
597608702GWAS1665562_Hbenign neoplasm of eye QTL GWAS1665562 (human)2e-38benign neoplasm of eye178161634581616346Human
597469822GWAS1565896_HMyopia QTL GWAS1565896 (human)8e-13Myopia178156396781563968Human
597275130GWAS1371204_Hage-related hearing impairment QTL GWAS1371204 (human)3e-12hearing physiology trait (VT:0002104)178155769881557699Human
596949617GWAS1069136_HRed cell distribution width QTL GWAS1069136 (human)1e-11erythrocyte size trait (VT:0000248)red blood cell distribution width- standard deviation (CMO:0003232)178155863481558635Human
597088627GWAS1184701_Hmean reticulocyte volume QTL GWAS1184701 (human)5e-11reticulocyte morphology trait (VT:0002424)mean corpuscular volume (CMO:0000038)178155863481558635Human
597041264GWAS1137338_Hcataract QTL GWAS1137338 (human)2e-12cataract178159790481597905Human
597109105GWAS1205179_Hmathematical ability QTL GWAS1205179 (human)3e-14cognitive behavior trait (VT:0010450)178157578781575788Human
596954492GWAS1074011_HRed cell distribution width QTL GWAS1074011 (human)3e-16Red cell distribution width178155863481558635Human
597028987GWAS1125061_HRed cell distribution width QTL GWAS1125061 (human)8e-09erythrocyte size trait (VT:0000248)red blood cell distribution width- standard deviation (CMO:0003232)178155863481558635Human
597044198GWAS1140272_HAstigmatism QTL GWAS1140272 (human)2e-09Astigmatism178158222481582225Human
597604975GWAS1661835_HRed cell distribution width QTL GWAS1661835 (human)6e-27erythrocyte size trait (VT:0000248)red blood cell distribution width- standard deviation (CMO:0003232)178155863481558635Human
597110116GWAS1206190_Hmathematical ability QTL GWAS1206190 (human)5e-16cognitive behavior trait (VT:0010450)178161010181610102Human
597211630GWAS1307704_HStrabismus QTL GWAS1307704 (human)2e-08Strabismus178161846681618467Human
597613032GWAS1669892_HRed cell distribution width QTL GWAS1669892 (human)2e-13erythrocyte size trait (VT:0000248)red blood cell distribution width- standard deviation (CMO:0003232)178155863481558635Human
596959337GWAS1078856_Hglomerular filtration rate QTL GWAS1078856 (human)3e-12glomerular filtration rate178161920181619202Human
597152874GWAS1248948_Hlifestyle measurement, anxiety disorder measurement QTL GWAS1248948 (human)9e-11anxiety-related behavior trait (VT:0010716)178163386081633861Human
407377719GWAS1026695_Hobsolete_red blood cell distribution width QTL GWAS1026695 (human)8e-09obsolete_red blood cell distribution width178155863481558635Human

Markers in Region
SHGC-58033  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371779,525,681 - 79,525,912UniSTSGRCh37
Build 361777,136,125 - 77,136,356RGDNCBI36
Celera1776,170,040 - 76,170,271RGD
Cytogenetic Map17qterUniSTS
HuRef1774,973,282 - 74,973,513UniSTS
TNG Radiation Hybrid Map1736962.0UniSTS
RH79771  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371779,524,413 - 79,524,646UniSTSGRCh37
Build 361777,134,857 - 77,135,090RGDNCBI36
Celera1776,168,772 - 76,169,005RGD
Cytogenetic Map17qterUniSTS
HuRef1774,972,014 - 74,972,247UniSTS
SHGC-148718  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371779,579,399 - 79,579,692UniSTSGRCh37
Build 361777,189,841 - 77,190,134RGDNCBI36
Celera1776,224,074 - 76,224,367RGD
Cytogenetic Map17qterUniSTS
HuRef1775,026,001 - 75,026,294UniSTS
TNG Radiation Hybrid Map1736943.0UniSTS
SHGC-156246  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371779,532,710 - 79,533,022UniSTSGRCh37
Build 361777,143,152 - 77,143,464RGDNCBI36
Celera1776,177,085 - 76,177,397RGD
Cytogenetic Map17qterUniSTS
HuRef1774,980,323 - 74,980,635UniSTS
TNG Radiation Hybrid Map1736968.0UniSTS
RH46882  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371779,523,979 - 79,524,168UniSTSGRCh37
Build 361777,134,423 - 77,134,612RGDNCBI36
Celera1776,168,338 - 76,168,527RGD
Cytogenetic Map17qterUniSTS
HuRef1774,971,580 - 74,971,769UniSTS
GeneMap99-GB4 RH Map17527.2UniSTS
NCBI RH Map17810.0UniSTS
STS-N27028  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371779,604,978 - 79,605,157UniSTSGRCh37
Build 361777,215,383 - 77,215,562RGDNCBI36
Cytogenetic Map17qterUniSTS
GeneMap99-GB4 RH Map17527.2UniSTS
NCBI RH Map17810.0UniSTS
D10S16   No map positions available.
GDB:631802  
Human AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map10q25.3UniSTS
Cytogenetic Map15q13UniSTS
Cytogenetic Map11p15.4UniSTS
Cytogenetic Map1p36.32UniSTS
Cytogenetic Map14q13.2UniSTS
Cytogenetic Map19q13.41UniSTS
Cytogenetic Map1q32UniSTS
Cytogenetic Map17q11UniSTS
Cytogenetic MapXp11.23UniSTS
Cytogenetic Map12q13.13UniSTS
Cytogenetic Map14q23.3UniSTS
Cytogenetic Map3q27UniSTS
Cytogenetic Map19q13.12UniSTS
Cytogenetic Map19q13.2UniSTS
Cytogenetic Map9p13.3-p12UniSTS
Cytogenetic Map16q11.2UniSTS
Cytogenetic Map3q12.3UniSTS
Cytogenetic Map14q22UniSTS
Cytogenetic Map5q21-q22UniSTS
Cytogenetic Map5q23.3UniSTS
Cytogenetic Map2q33-q34UniSTS
Cytogenetic Map4q31.3UniSTS
Cytogenetic Map1p31.3UniSTS
Cytogenetic Map14q11.2UniSTS
Cytogenetic Map19q13.43UniSTS
Cytogenetic MapXp11.3UniSTS
Cytogenetic Map4q12UniSTS
Cytogenetic Map8p11.21UniSTS
Cytogenetic Map3p21.31UniSTS
Cytogenetic Map19p13.2UniSTS
Cytogenetic Map5q14.1UniSTS
Cytogenetic Map17q22.2UniSTS
Cytogenetic Map22q13.1UniSTS
Cytogenetic Map19p13UniSTS
Cytogenetic Map22q13.31-q13.33UniSTS
Cytogenetic Map14q24.3UniSTS
Cytogenetic Map11q13UniSTS
Cytogenetic Map10p11UniSTS
Cytogenetic Map7q22.1UniSTS
Cytogenetic Map19q13.32UniSTS
Cytogenetic Map1q44UniSTS
Cytogenetic Map15q22.31UniSTS
Cytogenetic Map2q31.1UniSTS
Cytogenetic Map5q31.1UniSTS
Cytogenetic Map1p36.31UniSTS
Cytogenetic MapXq24UniSTS
Cytogenetic Map19q13.4UniSTS
Cytogenetic Map16p13.3UniSTS
Cytogenetic Map19p12UniSTS
Cytogenetic Map3p25.3UniSTS
Cytogenetic Map1q21.2UniSTS
Cytogenetic Map12q22UniSTS
Cytogenetic Map19q13.3UniSTS
Cytogenetic Map1q21-q23UniSTS
Cytogenetic Map16p11.2UniSTS
Cytogenetic Map1p35.3UniSTS
Cytogenetic Map1p35.1UniSTS
Cytogenetic Map1p34.3UniSTS
Cytogenetic Map1p36.22UniSTS
Cytogenetic Map1p35.3-p33UniSTS
Cytogenetic Map1q21UniSTS
Cytogenetic Map17q24.1UniSTS
Cytogenetic Map7q36.3UniSTS
Cytogenetic Map17q11.2UniSTS
Cytogenetic Map22q13.2UniSTS
Cytogenetic Map22q11.23UniSTS
Cytogenetic Map18q11.2UniSTS
Cytogenetic Map1p31UniSTS
Cytogenetic Map19q13.1UniSTS
Cytogenetic Map8p22UniSTS
Cytogenetic Map1p13.3UniSTS
Cytogenetic Map20p13UniSTS
Cytogenetic Map10q24.32UniSTS
Cytogenetic Map2q33.2UniSTS
Cytogenetic Map6q23.3UniSTS
Cytogenetic Map21q22.3UniSTS
Cytogenetic Map2q14.3UniSTS
Cytogenetic Map1p22.2UniSTS
Cytogenetic Map17q22UniSTS
Cytogenetic Map2q35UniSTS
Cytogenetic Map22q11.21UniSTS
Cytogenetic Map17qterUniSTS
Cytogenetic Map16q22.2UniSTS
Cytogenetic MapXp22.33UniSTS
Cytogenetic MapYp11.32UniSTS
Cytogenetic Map18q12.1UniSTS
Cytogenetic Map10p15.1UniSTS
Cytogenetic Map19p13.11UniSTS
Cytogenetic Map15q23UniSTS
Cytogenetic MapXp11.22UniSTS
Cytogenetic Map6p21.1UniSTS
Cytogenetic Map2p16.1UniSTS
Cytogenetic Map1p32UniSTS
Cytogenetic Map11q13.4UniSTS
Cytogenetic Map8q13UniSTS
Cytogenetic Map5q31.2-q34UniSTS
Cytogenetic Map2q11.2UniSTS
Cytogenetic Map1p36.13UniSTS
Cytogenetic Map3q21-q22UniSTS
Cytogenetic Map11q22-q23UniSTS
Cytogenetic Map3q21UniSTS
Cytogenetic Map7p11.2UniSTS
Cytogenetic Map1p32.3UniSTS
Cytogenetic Map14q21UniSTS
Cytogenetic Map16q22UniSTS
Cytogenetic Map22q13.33UniSTS
Cytogenetic Map1q25.3UniSTS
Cytogenetic Map19q13UniSTS
Cytogenetic Map7q11.23UniSTS
Cytogenetic Map19q13.42UniSTS
Cytogenetic Map2p11.2UniSTS
Cytogenetic Map1q32.1UniSTS
Cytogenetic Map12q24.31UniSTS
Cytogenetic Map11p15.5UniSTS
Cytogenetic Map6q25.1UniSTS
Cytogenetic Map1p36-p35UniSTS
Cytogenetic Map17q11-q21UniSTS
Cytogenetic Map21q22.1UniSTS
Cytogenetic MapXq13.1UniSTS
Cytogenetic Map6p21.31UniSTS
Cytogenetic Map4q13.3UniSTS
Cytogenetic Map19p13.3UniSTS
Cytogenetic Map18p11.22-p11.21UniSTS
Cytogenetic Map1q41UniSTS
Cytogenetic Map3q23UniSTS
Cytogenetic Map1p36.21UniSTS
Cytogenetic Map6q21UniSTS
Cytogenetic Map2p14UniSTS
Cytogenetic Map17q21UniSTS
Cytogenetic Map2q12.2UniSTS
Cytogenetic Map7p22.1UniSTS
Cytogenetic Map2q21UniSTS
Cytogenetic Map3p14.3UniSTS
Cytogenetic Map16p13.2UniSTS
Cytogenetic Map1p13.2UniSTS
Cytogenetic MapXq26.3UniSTS
Cytogenetic Map15q24.1UniSTS
Cytogenetic Map4q22.1UniSTS
Cytogenetic Map17q21.2UniSTS
Cytogenetic Map16q22.1UniSTS
Cytogenetic Map8q12.1UniSTS
Cytogenetic Map12q14.3UniSTS
Cytogenetic Map2q36.3UniSTS
Cytogenetic Map16q23.1UniSTS
Cytogenetic Map9q32UniSTS
Cytogenetic Map2q12UniSTS
Cytogenetic Map11cen-q12UniSTS
Cytogenetic Map20q11.22UniSTS
Cytogenetic Map15q13.3UniSTS
Cytogenetic MapXp21.1UniSTS
Cytogenetic Map5q31UniSTS
Cytogenetic Map20p11.2UniSTS
Cytogenetic Map3p22.3UniSTS
Cytogenetic Map17q21.31UniSTS
Cytogenetic Map15q15.1UniSTS
Cytogenetic Map9p13.3UniSTS
Cytogenetic Map2p24.1UniSTS
D17S1511E  
Human AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map17qterUniSTS
D10S16  
Human AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map3p24.2UniSTS
Cytogenetic Map21q21.3UniSTS
Cytogenetic Map1p36.33UniSTS
Cytogenetic Map16q24.1UniSTS
Cytogenetic Map5q31UniSTS
Cytogenetic Map17p11.2UniSTS
Cytogenetic Map11q24.2UniSTS
Cytogenetic Map5q23.3-q31.1UniSTS
Cytogenetic Map7q32UniSTS
Cytogenetic Map1q21-q23UniSTS
Cytogenetic MapXp11.23UniSTS
Cytogenetic Map2q11.2-q12UniSTS
Cytogenetic Map7p13UniSTS
Cytogenetic Map19q13.4UniSTS
Cytogenetic Map17q25.1UniSTS
Cytogenetic Map1p36.21UniSTS
Cytogenetic Map3p22UniSTS
Cytogenetic Map19p13.2UniSTS
Cytogenetic Map2p12UniSTS
Cytogenetic Map19q13.12UniSTS
Cytogenetic Map9p13.3-p12UniSTS
Cytogenetic Map3p21.1UniSTS
Cytogenetic Map5p13.1UniSTS
Cytogenetic Map14q24.3UniSTS
Cytogenetic Map2p25.2UniSTS
Cytogenetic Map5q21-q22UniSTS
Cytogenetic Map2p22.1UniSTS
Cytogenetic Map1q32.3UniSTS
Cytogenetic Map1p36.11UniSTS
Cytogenetic Map18q12UniSTS
Cytogenetic Map19q13.41UniSTS
Cytogenetic Map17q21UniSTS
Cytogenetic Map3q27.3UniSTS
Cytogenetic Map2q37.3UniSTS
Cytogenetic Map19p13.3UniSTS
Cytogenetic Map2p15UniSTS
Cytogenetic Map20q13.32UniSTS
Cytogenetic Map10q26UniSTS
Cytogenetic Map19q13.3UniSTS
Cytogenetic Map7q21.13UniSTS
Cytogenetic Map1p33UniSTS
Cytogenetic Map1p35.1UniSTS
Cytogenetic Map9q22.3UniSTS
Cytogenetic Map17q11.2UniSTS
Cytogenetic Map12q13.2UniSTS
Cytogenetic Map22q13.31-q13.33UniSTS
Cytogenetic Map1q24.1UniSTS
Cytogenetic Map7q32.2UniSTS
Cytogenetic Map19q13.43UniSTS
Cytogenetic Map1q42.11UniSTS
Cytogenetic Map19p13.11UniSTS
Cytogenetic Map12q24.31UniSTS
Cytogenetic Map19p13.1UniSTS
Cytogenetic Map11q13.5UniSTS
Cytogenetic Map11q24UniSTS
Cytogenetic Map2q11.2-q12.1UniSTS
Cytogenetic Map3q21.2UniSTS
Cytogenetic Map19q13.1UniSTS
Cytogenetic Map19p13UniSTS
Cytogenetic Map8p11.21UniSTS
Cytogenetic Map17p13.2UniSTS
Cytogenetic Map16p13.3UniSTS
Cytogenetic Map20q12UniSTS
Cytogenetic Map2q13UniSTS
Cytogenetic Map5q31.1UniSTS
Cytogenetic Map17q22.2UniSTS
Cytogenetic Map18q21UniSTS
Cytogenetic Map11q14.2UniSTS
Cytogenetic Map16q22.1UniSTS
Cytogenetic Map4q34UniSTS
Cytogenetic Map2p22-p21UniSTS
Cytogenetic Map10q26.3UniSTS
Cytogenetic Map7q22.1UniSTS
Cytogenetic Map11q13.4UniSTS
Cytogenetic Map2q37.1UniSTS
Cytogenetic Map17q21.31UniSTS
Cytogenetic Map1p36.23UniSTS
Cytogenetic Map7p22.2UniSTS
Cytogenetic Map12q24.13UniSTS
Cytogenetic Map8p21.2UniSTS
Cytogenetic Map22q13.33UniSTS
Cytogenetic Map14q32.12UniSTS
Cytogenetic Map2q31.1UniSTS
Cytogenetic Map1p36.31UniSTS
Cytogenetic Map1p32.3UniSTS
Cytogenetic MapXq26.3UniSTS
Cytogenetic Map8p23.1UniSTS
Cytogenetic Map6q13UniSTS
Cytogenetic Map3p21.31UniSTS
Cytogenetic Map9p13.2UniSTS
Cytogenetic Map17q25UniSTS
Cytogenetic Map9q22.2UniSTS
Cytogenetic Map14q32.33UniSTS
Cytogenetic Map1q21.3UniSTS
Cytogenetic Map13q12.11UniSTS
Cytogenetic Map16p13.13UniSTS
Cytogenetic Map11p15.4UniSTS
Cytogenetic Map7q22UniSTS
Cytogenetic Map3q21UniSTS
Cytogenetic Map11q12.3UniSTS
Cytogenetic Map22q13UniSTS
Cytogenetic Map4p16.3UniSTS
Cytogenetic Map11p15.3-p15.1UniSTS
Cytogenetic Map11q13UniSTS
Cytogenetic Map22q11.21UniSTS
Cytogenetic Map10q22.2UniSTS
Cytogenetic Map17p13.3UniSTS
Cytogenetic Map7p22.3UniSTS
Cytogenetic Map3p21UniSTS
Cytogenetic MapXp22.3UniSTS
Cytogenetic Map1q42.3UniSTS
Cytogenetic Map18q11.2UniSTS
Cytogenetic Map6p24.3UniSTS
Cytogenetic Map7q34UniSTS
Cytogenetic Map16p11.2UniSTS
Cytogenetic Map1q25UniSTS
Cytogenetic Map15q11.2UniSTS
Cytogenetic Map19p13.12UniSTS
Cytogenetic Map3q26UniSTS
Cytogenetic Map12p12.1-p11.2UniSTS
Cytogenetic Map11q23.1UniSTS
Cytogenetic Map13q14.11UniSTS
Cytogenetic Map22q13.1UniSTS
Cytogenetic Map7p15.2UniSTS
Cytogenetic Map1q21UniSTS
Cytogenetic Map10q11.22UniSTS
Cytogenetic Map5p12UniSTS
Cytogenetic Map6q21UniSTS
Cytogenetic Map9q21.13UniSTS
Cytogenetic Map5q13.2UniSTS
Cytogenetic Map19q13.2UniSTS
Cytogenetic MapXq23UniSTS
Cytogenetic Map2p21UniSTS
Cytogenetic Map22q11.1UniSTS
Cytogenetic Map16q13UniSTS
Cytogenetic Map16pUniSTS
Cytogenetic Map11q13.2UniSTS
Cytogenetic MapXp11.3UniSTS
Cytogenetic Map1q25.1UniSTS
Cytogenetic Map10q23-q24UniSTS
Cytogenetic Map20p13UniSTS
Cytogenetic Map7q31UniSTS
Cytogenetic Map6q23.3UniSTS
Cytogenetic MapXp22.2UniSTS
Cytogenetic Map9q32UniSTS
Cytogenetic Map1q32.1UniSTS
Cytogenetic Map17q25.3UniSTS
Cytogenetic Map20q11.22UniSTS
Cytogenetic Map4q35.1UniSTS
Cytogenetic Map3q21.3UniSTS
Cytogenetic Map5q12.3UniSTS
Cytogenetic Map6q25.1UniSTS
Cytogenetic Map14q24.1UniSTS
Cytogenetic Map2q33.2UniSTS
Cytogenetic Map20q13.13UniSTS
Cytogenetic Map14q23.2UniSTS
Cytogenetic Map15q24.1UniSTS
Cytogenetic Map3q23UniSTS
Cytogenetic Map8q23.1UniSTS
Cytogenetic Map2q14.3UniSTS
Cytogenetic Map20q13.33UniSTS
Cytogenetic Map21q22.11UniSTS
Cytogenetic Map5p15.1UniSTS
Cytogenetic Map15q13.1UniSTS
Cytogenetic Map15q26.1UniSTS
Cytogenetic Map7q32.1UniSTS
Cytogenetic Map8p21.3UniSTS
Cytogenetic Map1p31.1UniSTS
Cytogenetic Map17qterUniSTS
Cytogenetic Map11q13.1UniSTS
Cytogenetic Map12q22UniSTS
Cytogenetic Map16q22.2UniSTS
Cytogenetic Map14q32UniSTS
Cytogenetic MapXp22.33UniSTS
Cytogenetic MapYp11.32UniSTS
Cytogenetic Map14q24.2UniSTS
Cytogenetic Map3p25.3UniSTS
Cytogenetic Map13q34UniSTS
Cytogenetic Map10p11.23UniSTS
Cytogenetic Map15q15.2UniSTS
Cytogenetic Map8p21.1UniSTS
Cytogenetic Map22q12.2UniSTS
Cytogenetic Map15q22.2UniSTS
Cytogenetic Map15q21UniSTS
Cytogenetic Map6p21.31UniSTS
Cytogenetic Map10q23.1UniSTS
Cytogenetic Map1p36.2UniSTS
Cytogenetic Map2p16.1UniSTS
Cytogenetic Map22q11.2UniSTS
Cytogenetic Map17q23.3UniSTS
Cytogenetic Map12q13.13UniSTS
Cytogenetic Map20q12-q13.12UniSTS
Cytogenetic Map3q26.33UniSTS
Cytogenetic Map5q31.2-q34UniSTS
Cytogenetic Map5q31.2UniSTS
Cytogenetic Map8q24.3UniSTS
Cytogenetic Map5q35.3UniSTS
Cytogenetic MapXq13-q21UniSTS
Cytogenetic Map7q11.23UniSTS
Cytogenetic Map1pter-q31.3UniSTS
Cytogenetic Map15q21.1UniSTS
Cytogenetic Map3q13.33UniSTS
Cytogenetic MapXq13.1UniSTS
Cytogenetic Map3p23-p21UniSTS
Cytogenetic Map11q22-q23UniSTS
Cytogenetic Map1p34.1UniSTS
Cytogenetic Map2q21.1UniSTS
Cytogenetic Map6p21.3UniSTS
Cytogenetic Map7p11.2UniSTS
Cytogenetic Map7p22.1UniSTS
Cytogenetic Map17q21.33UniSTS
Cytogenetic Map14q32.31UniSTS
Cytogenetic Map10q11.21UniSTS
Cytogenetic Map16q22UniSTS
Cytogenetic Map2q24UniSTS
Cytogenetic Map1q23.3UniSTS
Cytogenetic Map3q13.13UniSTS
Cytogenetic Map19p12UniSTS
Cytogenetic Map16p13.1UniSTS
Cytogenetic Map19q13.11UniSTS
Cytogenetic MapXp22.12UniSTS
Cytogenetic Map9q21.33UniSTS
Cytogenetic Map5q32UniSTS
Cytogenetic Map16q11.2UniSTS
Cytogenetic Map10p12.31UniSTS
Cytogenetic Map3q25.33UniSTS
Cytogenetic Map8q21.2UniSTS
Cytogenetic Map10q26.13UniSTS
Cytogenetic Map10q25.3UniSTS
Cytogenetic Map15q14-q15UniSTS
Cytogenetic Map8p11.2UniSTS
Cytogenetic Map1p34.3UniSTS
Cytogenetic Map4p15.2UniSTS
Cytogenetic Map17q12UniSTS
Cytogenetic Map7p15.3UniSTS
Cytogenetic Map7p21.1UniSTS
Cytogenetic Map1p36.32UniSTS
Cytogenetic Map1p36.1-p34UniSTS
Cytogenetic Map4p13UniSTS
Cytogenetic Map7q31.1-q31.2UniSTS
Cytogenetic Map8q22.2UniSTS
Cytogenetic Map15q21.1-q21.2UniSTS
Cytogenetic Map16q21UniSTS
Cytogenetic MapXq12UniSTS
Cytogenetic Map7q36.1UniSTS
Cytogenetic Map7p14.1UniSTS
Cytogenetic Map6p23UniSTS
Cytogenetic Map3p11.1UniSTS
Cytogenetic Map15q21.3UniSTS
Cytogenetic Map13q12UniSTS
Cytogenetic Map12q23.2UniSTS
Cytogenetic Map22q13.2UniSTS
Cytogenetic Map16q22.3UniSTS
Cytogenetic MapXq21UniSTS
Cytogenetic Map15q15UniSTS
Cytogenetic Map4q25UniSTS
Cytogenetic Map3q22.1UniSTS
Cytogenetic Map1q25.2UniSTS
Cytogenetic Map11q14.3UniSTS
Cytogenetic Map10q21.3UniSTS
Cytogenetic Map14q11.2UniSTS
Cytogenetic Map15q24.2UniSTS
Cytogenetic Map2p14UniSTS
Cytogenetic Map7q11.1UniSTS
Cytogenetic Map6p21UniSTS
Cytogenetic Map2p25.1-p24.1UniSTS
Cytogenetic Map16p12.2UniSTS
Cytogenetic Map4q13.3UniSTS
Cytogenetic Map12p11.21UniSTS
Cytogenetic Map18q21.3UniSTS
Cytogenetic Map17p13UniSTS
Cytogenetic Map8q12UniSTS
Cytogenetic Map2q35UniSTS
Cytogenetic Map21q22.13UniSTS
Cytogenetic Map6p21.1UniSTS
Cytogenetic Map17q24.3UniSTS
Cytogenetic Map1p21UniSTS
Cytogenetic MapXq24UniSTS
Cytogenetic Map2q34UniSTS
Cytogenetic Map8p11.23UniSTS
Cytogenetic Map1p36.13UniSTS
Cytogenetic Map9q34.3UniSTS
Cytogenetic Map11q23.3UniSTS
Cytogenetic Map9q33.3UniSTS
Cytogenetic Map16p12UniSTS
Cytogenetic Map2p23.3UniSTS
Cytogenetic Map20q11.23UniSTS
Cytogenetic Map12q15UniSTS
Cytogenetic Map2q12.2UniSTS
Cytogenetic Map8p12UniSTS
Cytogenetic Map7q22.3UniSTS
Cytogenetic Map19q13.42UniSTS
Cytogenetic Map4q35UniSTS
Cytogenetic Map19q13.1-q13.2UniSTS
Cytogenetic Map16p13.12UniSTS
Cytogenetic Map9q34.1UniSTS
Cytogenetic Map7q36.2UniSTS
Cytogenetic Map3p23UniSTS
Cytogenetic Map6p25UniSTS
Cytogenetic Map9q22.1-q22.2UniSTS
Cytogenetic Map3q26.1-q26.2UniSTS
Cytogenetic Map5q31-q34UniSTS
Cytogenetic Map9q34UniSTS
Cytogenetic Map12p13UniSTS
Cytogenetic Map4q26UniSTS
Cytogenetic Map4p15.3UniSTS
Cytogenetic Map2q33.1UniSTS
Cytogenetic Map15q15.1UniSTS
Cytogenetic Map1p32-p31UniSTS
Cytogenetic Map7q36.3UniSTS
Cytogenetic Map4q22.1UniSTS
Cytogenetic Map3q13.2UniSTS
Cytogenetic Map2q33.3UniSTS
Cytogenetic Map8p22UniSTS
Cytogenetic Map22q11.23UniSTS
Cytogenetic Map19q13.32UniSTS
Cytogenetic Map18q21.32UniSTS
Cytogenetic Map15q26.3UniSTS
Cytogenetic Map12q14.2UniSTS
Cytogenetic Map2q31.1-q31.2UniSTS
Cytogenetic Map12q13.11UniSTS
Cytogenetic Map9p13.3UniSTS
Cytogenetic Map9q34.11UniSTS
Cytogenetic Map6p12.3UniSTS
Cytogenetic Map6q22.32UniSTS
Cytogenetic Map5q15UniSTS
Cytogenetic Map3p14.2UniSTS
Cytogenetic Map3p25.1UniSTS
Cytogenetic Map3q27.1UniSTS
Cytogenetic Map2q36.1UniSTS
Cytogenetic Map2q37UniSTS
Cytogenetic Map19q13.31UniSTS
Cytogenetic Map4q23UniSTS
Cytogenetic Map16q24.3UniSTS
Cytogenetic Map15q22.31UniSTS
Cytogenetic Map10q22.1UniSTS
Cytogenetic Map18q11.1UniSTS
Cytogenetic Map16q23.2UniSTS
Cytogenetic Map12q13UniSTS
Cytogenetic Map18q21.1UniSTS
Cytogenetic Map12q12-q13UniSTS
Cytogenetic Map9p22.3UniSTS
Cytogenetic Map6p21.2UniSTS
Cytogenetic Map6p22.1UniSTS
Cytogenetic Map11p15.1UniSTS
Cytogenetic Map19qterUniSTS
Cytogenetic Map20q13.3-qterUniSTS
Cytogenetic Map12q14.1UniSTS
Cytogenetic Map7p11UniSTS
Cytogenetic Map7p15UniSTS
Cytogenetic Map1p13.3UniSTS
Cytogenetic Map16p12.3UniSTS
Cytogenetic Map3q29UniSTS
Cytogenetic Map3p21.3UniSTS
Cytogenetic Map13q14UniSTS
Cytogenetic Map17pUniSTS
Cytogenetic Map11p14.1UniSTS
Cytogenetic Map2p13.2UniSTS
Cytogenetic Map15q25.2UniSTS
Cytogenetic Map10q11.23UniSTS
Cytogenetic Map20q13.12UniSTS
Cytogenetic Map13q22.1UniSTS
Cytogenetic Map17p13.1UniSTS
Cytogenetic Map14q23.3UniSTS
Cytogenetic Map3q26.2UniSTS


Expression

RNA-SEQ Expression

adipose tissue
alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
entire extraembryonic component
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
pharyngeal arch
renal system
reproductive system
respiratory system
sensory system
visual system
1204 2439 2788 2253 4974 1726 2351 6 624 1951 465 2270 7306 6472 53 3734 1 852 1744 1617 175 1

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001369698 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001437986 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001438810 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_017921 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_130139 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_130140 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011524979 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011524980 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011524982 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047436365 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047436366 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047436367 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047436368 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054316628 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054316629 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054316630 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054316631 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054316632 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054316633 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054316634 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054316635 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001752557 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_934501 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_934502 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AB040932 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC137896 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC139530 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK000664 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK023046 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK023272 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK024398 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK074322 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK294473 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK311741 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL133629 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL834300 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC013406 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC025930 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BU542911 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH471099 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CK903591 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CP068261 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DA998574 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DC322260 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DQ587272 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DQ587568 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HY116973 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HY179409 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENST00000331134   ⟹   ENSP00000331487
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1781,556,887 - 81,637,112 (-)Ensembl
Ensembl Acc Id: ENST00000374747   ⟹   ENSP00000363879
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1781,561,766 - 81,637,060 (-)Ensembl
Ensembl Acc Id: ENST00000570300
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1781,608,811 - 81,648,465 (-)Ensembl
Ensembl Acc Id: ENST00000570324   ⟹   ENSP00000461478
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1781,604,572 - 81,613,402 (-)Ensembl
Ensembl Acc Id: ENST00000571562
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1781,612,679 - 81,613,347 (-)Ensembl
Ensembl Acc Id: ENST00000571714   ⟹   ENSP00000460465
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1781,559,182 - 81,572,073 (-)Ensembl
Ensembl Acc Id: ENST00000572346
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1781,559,064 - 81,566,985 (-)Ensembl
Ensembl Acc Id: ENST00000572351
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1781,588,091 - 81,597,319 (-)Ensembl
Ensembl Acc Id: ENST00000572760   ⟹   ENSP00000467400
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1781,558,789 - 81,566,602 (-)Ensembl
Ensembl Acc Id: ENST00000572824   ⟹   ENSP00000458384
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1781,559,268 - 81,569,083 (-)Ensembl
Ensembl Acc Id: ENST00000573212   ⟹   ENSP00000459462
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1781,559,316 - 81,569,102 (-)Ensembl
Ensembl Acc Id: ENST00000573328
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1781,604,609 - 81,608,912 (-)Ensembl
Ensembl Acc Id: ENST00000573519   ⟹   ENSP00000459457
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1781,559,091 - 81,569,064 (-)Ensembl
Ensembl Acc Id: ENST00000573876   ⟹   ENSP00000465247
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1781,559,125 - 81,566,635 (-)Ensembl
Ensembl Acc Id: ENST00000574095
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1781,636,397 - 81,637,110 (-)Ensembl
Ensembl Acc Id: ENST00000574344
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1781,604,664 - 81,614,381 (-)Ensembl
Ensembl Acc Id: ENST00000574897   ⟹   ENSP00000461543
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1781,564,909 - 81,637,079 (-)Ensembl
Ensembl Acc Id: ENST00000574964
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1781,559,014 - 81,560,889 (-)Ensembl
Ensembl Acc Id: ENST00000576713
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1781,559,396 - 81,572,108 (-)Ensembl
Ensembl Acc Id: ENST00000576940
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1781,564,213 - 81,567,495 (-)Ensembl
Ensembl Acc Id: ENST00000625705   ⟹   ENSP00000486640
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1781,608,801 - 81,629,875 (-)Ensembl
Ensembl Acc Id: ENST00000705719   ⟹   ENSP00000516165
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1781,556,887 - 81,637,112 (-)Ensembl
RefSeq Acc Id: NM_001369698   ⟹   NP_001356627
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381781,556,887 - 81,637,112 (-)NCBI
T2T-CHM13v2.01782,474,166 - 82,554,047 (-)NCBI
Sequence:
RefSeq Acc Id: NM_017921   ⟹   NP_060391
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381781,556,887 - 81,637,112 (-)NCBI
GRCh371779,523,913 - 79,604,138 (-)RGD
Build 361777,134,357 - 77,214,543 (-)NCBI Archive
Celera1776,168,272 - 76,249,182 (-)RGD
HuRef1774,971,514 - 75,050,623 (-)RGD
CHM1_11779,610,122 - 79,690,080 (-)NCBI
T2T-CHM13v2.01782,474,166 - 82,554,047 (-)NCBI
Sequence:
RefSeq Acc Id: NR_130139
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381781,556,885 - 81,577,433 (-)NCBI
CHM1_11779,610,122 - 79,630,670 (-)NCBI
T2T-CHM13v2.01782,474,164 - 82,494,720 (-)NCBI
Sequence:
RefSeq Acc Id: NR_130140
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381781,556,887 - 81,566,602 (-)NCBI
CHM1_11779,610,122 - 79,619,872 (-)NCBI
T2T-CHM13v2.01782,474,166 - 82,483,895 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011524979   ⟹   XP_011523281
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381781,565,285 - 81,637,112 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011524980   ⟹   XP_011523282
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381781,556,885 - 81,637,112 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011524982   ⟹   XP_011523284
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381781,564,055 - 81,637,112 (-)NCBI
Sequence:
RefSeq Acc Id: XM_047436365   ⟹   XP_047292321
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381781,556,885 - 81,637,112 (-)NCBI
RefSeq Acc Id: XM_047436366   ⟹   XP_047292322
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381781,564,056 - 81,637,112 (-)NCBI
RefSeq Acc Id: XM_047436367   ⟹   XP_047292323
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381781,567,426 - 81,637,112 (-)NCBI
RefSeq Acc Id: XM_047436368   ⟹   XP_047292324
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381781,556,885 - 81,610,228 (-)NCBI
RefSeq Acc Id: XM_054316628   ⟹   XP_054172603
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01782,482,578 - 82,554,047 (-)NCBI
RefSeq Acc Id: XM_054316629   ⟹   XP_054172604
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01782,474,164 - 82,554,047 (-)NCBI
RefSeq Acc Id: XM_054316630   ⟹   XP_054172605
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01782,474,164 - 82,554,047 (-)NCBI
RefSeq Acc Id: XM_054316631   ⟹   XP_054172606
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01782,478,454 - 82,554,047 (-)NCBI
RefSeq Acc Id: XM_054316632   ⟹   XP_054172607
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01782,481,361 - 82,554,047 (-)NCBI
RefSeq Acc Id: XM_054316633   ⟹   XP_054172608
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01782,481,362 - 82,554,047 (-)NCBI
RefSeq Acc Id: XM_054316634   ⟹   XP_054172609
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01782,484,719 - 82,554,047 (-)NCBI
RefSeq Acc Id: XM_054316635   ⟹   XP_054172610
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01782,474,164 - 82,527,487 (-)NCBI
Protein Sequences
Protein RefSeqs NP_001356627 (Get FASTA)   NCBI Sequence Viewer  
  NP_001424915 (Get FASTA)   NCBI Sequence Viewer  
  NP_001425739 (Get FASTA)   NCBI Sequence Viewer  
  NP_060391 (Get FASTA)   NCBI Sequence Viewer  
  XP_011523281 (Get FASTA)   NCBI Sequence Viewer  
  XP_011523282 (Get FASTA)   NCBI Sequence Viewer  
  XP_011523284 (Get FASTA)   NCBI Sequence Viewer  
  XP_047292321 (Get FASTA)   NCBI Sequence Viewer  
  XP_047292322 (Get FASTA)   NCBI Sequence Viewer  
  XP_047292323 (Get FASTA)   NCBI Sequence Viewer  
  XP_047292324 (Get FASTA)   NCBI Sequence Viewer  
  XP_054172603 (Get FASTA)   NCBI Sequence Viewer  
  XP_054172604 (Get FASTA)   NCBI Sequence Viewer  
  XP_054172605 (Get FASTA)   NCBI Sequence Viewer  
  XP_054172606 (Get FASTA)   NCBI Sequence Viewer  
  XP_054172607 (Get FASTA)   NCBI Sequence Viewer  
  XP_054172608 (Get FASTA)   NCBI Sequence Viewer  
  XP_054172609 (Get FASTA)   NCBI Sequence Viewer  
  XP_054172610 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH25930 (Get FASTA)   NCBI Sequence Viewer  
  BAA91314 (Get FASTA)   NCBI Sequence Viewer  
  BAA96023 (Get FASTA)   NCBI Sequence Viewer  
  BAB14372 (Get FASTA)   NCBI Sequence Viewer  
  BAB14499 (Get FASTA)   NCBI Sequence Viewer  
  BAG57700 (Get FASTA)   NCBI Sequence Viewer  
  CAD38971 (Get FASTA)   NCBI Sequence Viewer  
  EAW89661 (Get FASTA)   NCBI Sequence Viewer  
  EAW89662 (Get FASTA)   NCBI Sequence Viewer  
  EAW89663 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSP00000331487
  ENSP00000331487.5
  ENSP00000363879
  ENSP00000363879.5
GenBank Protein Q8TAT6 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_060391   ⟸   NM_017921
- Peptide Label: isoform 1
- UniProtKB: Q9NWR5 (UniProtKB/Swiss-Prot),   Q9H964 (UniProtKB/Swiss-Prot),   Q9H8V2 (UniProtKB/Swiss-Prot),   Q8N3J1 (UniProtKB/Swiss-Prot),   Q9P229 (UniProtKB/Swiss-Prot),   Q8TAT6 (UniProtKB/Swiss-Prot),   A0A994J7H4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_011523282   ⟸   XM_011524980
- Peptide Label: isoform X2
- UniProtKB: A0A994J7H4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_011523284   ⟸   XM_011524982
- Peptide Label: isoform X4
- UniProtKB: A0A994J7H4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_011523281   ⟸   XM_011524979
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: NP_001356627   ⟸   NM_001369698
- Peptide Label: isoform 2
- UniProtKB: A0A994J7H4 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSP00000331487   ⟸   ENST00000331134
Ensembl Acc Id: ENSP00000461478   ⟸   ENST00000570324
Ensembl Acc Id: ENSP00000363879   ⟸   ENST00000374747
Ensembl Acc Id: ENSP00000486640   ⟸   ENST00000625705
Ensembl Acc Id: ENSP00000460465   ⟸   ENST00000571714
Ensembl Acc Id: ENSP00000458384   ⟸   ENST00000572824
Ensembl Acc Id: ENSP00000467400   ⟸   ENST00000572760
Ensembl Acc Id: ENSP00000465247   ⟸   ENST00000573876
Ensembl Acc Id: ENSP00000459457   ⟸   ENST00000573519
Ensembl Acc Id: ENSP00000459462   ⟸   ENST00000573212
Ensembl Acc Id: ENSP00000461543   ⟸   ENST00000574897
RefSeq Acc Id: XP_047292321   ⟸   XM_047436365
- Peptide Label: isoform X3
RefSeq Acc Id: XP_047292324   ⟸   XM_047436368
- Peptide Label: isoform X7
RefSeq Acc Id: XP_047292322   ⟸   XM_047436366
- Peptide Label: isoform X5
- UniProtKB: A0A994J7H4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_047292323   ⟸   XM_047436367
- Peptide Label: isoform X6
Ensembl Acc Id: ENSP00000516165   ⟸   ENST00000705719
RefSeq Acc Id: XP_054172605   ⟸   XM_054316630
- Peptide Label: isoform X3
RefSeq Acc Id: XP_054172604   ⟸   XM_054316629
- Peptide Label: isoform X2
- UniProtKB: A0A994J7H4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_054172610   ⟸   XM_054316635
- Peptide Label: isoform X7
RefSeq Acc Id: XP_054172606   ⟸   XM_054316631
- Peptide Label: isoform X8
- UniProtKB: A0A994J7H4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_054172607   ⟸   XM_054316632
- Peptide Label: isoform X4
- UniProtKB: A0A994J7H4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_054172608   ⟸   XM_054316633
- Peptide Label: isoform X5
- UniProtKB: A0A994J7H4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_054172603   ⟸   XM_054316628
- Peptide Label: isoform X1
RefSeq Acc Id: XP_054172609   ⟸   XM_054316634
- Peptide Label: isoform X6
Protein Domains
MPN   NPL4 zinc-binding putative   Nuclear pore localisation protein NPL4 C-terminal   Nuclear pore localisation protein Npl4 ubiquitin-   RanBP2-type

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q8TAT6-F1-model_v2 AlphaFold Q8TAT6 1-608 view protein structure

Promoters
RGD ID:6794268
Promoter ID:HG_KWN:27363
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Lymphoblastoid
Transcripts:UC002KAR.1
Position:
Human AssemblyChrPosition (strand)Source
Build 361777,138,201 - 77,138,701 (-)MPROMDB
RGD ID:6794705
Promoter ID:HG_KWN:27367
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:CD4+TCell,   CD4+TCell_12Hour,   CD4+TCell_2Hour,   HeLa_S3,   K562,   Lymphoblastoid,   NB4
Transcripts:NM_017921,   UC002KAU.2,   UC002KAV.1
Position:
Human AssemblyChrPosition (strand)Source
Build 361777,214,006 - 77,214,612 (+)MPROMDB
RGD ID:7236617
Promoter ID:EPDNEW_H24053
Type:initiation region
Name:NPLOC4_2
Description:NPL4 homolog, ubiquitin recognition factor
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H24054  
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh381781,566,598 - 81,566,658EPDNEW
RGD ID:7236615
Promoter ID:EPDNEW_H24054
Type:initiation region
Name:NPLOC4_1
Description:NPL4 homolog, ubiquitin recognition factor
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H24053  
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh381781,637,112 - 81,637,172EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene HGNC:18261 AgrOrtholog
COSMIC NPLOC4 COSMIC
Ensembl Genes ENSG00000182446 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENST00000331134 ENTREZGENE
  ENST00000331134.11 UniProtKB/Swiss-Prot
  ENST00000374747 ENTREZGENE
  ENST00000374747.9 UniProtKB/Swiss-Prot
Gene3D-CATH Cytidine Deaminase, domain 2 UniProtKB/Swiss-Prot
  Phosphatidylinositol 3-kinase Catalytic Subunit, Chain A, domain 1 UniProtKB/Swiss-Prot
  Zn-finger domain of Sec23/24 UniProtKB/Swiss-Prot
GTEx ENSG00000182446 GTEx
HGNC ID HGNC:18261 ENTREZGENE
Human Proteome Map NPLOC4 Human Proteome Map
InterPro MPN UniProtKB/Swiss-Prot
  Npl4 UniProtKB/Swiss-Prot
  NPL4_C UniProtKB/Swiss-Prot
  Npl4_Ub-like_dom UniProtKB/Swiss-Prot
  NPL4_Zn-bd_put UniProtKB/Swiss-Prot
  Ubiquitin-like_domsf UniProtKB/Swiss-Prot
  Znf_RanBP2 UniProtKB/Swiss-Prot
  Znf_RanBP2_sf UniProtKB/Swiss-Prot
KEGG Report hsa:55666 UniProtKB/Swiss-Prot
NCBI Gene 55666 ENTREZGENE
OMIM 606590 OMIM
PANTHER NUCLEAR PROTEIN LOCALIZATION PROTEIN 4 HOMOLOG UniProtKB/Swiss-Prot
  PTHR12710 UniProtKB/Swiss-Prot
Pfam NPL4 UniProtKB/Swiss-Prot
  UN_NPL4 UniProtKB/Swiss-Prot
  zf-NPL4 UniProtKB/Swiss-Prot
PharmGKB PA143485558 PharmGKB
PIRSF Polyub_prc_Npl4 UniProtKB/Swiss-Prot
PROSITE MPN UniProtKB/Swiss-Prot
  ZF_RANBP2_1 UniProtKB/Swiss-Prot
  ZF_RANBP2_2 UniProtKB/Swiss-Prot
SMART ZnF_RBZ UniProtKB/Swiss-Prot
Superfamily-SCOP SSF54236 UniProtKB/Swiss-Prot
  SSF90209 UniProtKB/Swiss-Prot
UniProt A0A0D9SFI9_HUMAN UniProtKB/TrEMBL
  A0A994J7H4 ENTREZGENE, UniProtKB/TrEMBL
  I3L0W3_HUMAN UniProtKB/TrEMBL
  I3L281_HUMAN UniProtKB/TrEMBL
  I3L283_HUMAN UniProtKB/TrEMBL
  I3L3I1_HUMAN UniProtKB/TrEMBL
  I3L4S2_HUMAN UniProtKB/TrEMBL
  I3L4U9_HUMAN UniProtKB/TrEMBL
  K7EJN1_HUMAN UniProtKB/TrEMBL
  NPL4_HUMAN UniProtKB/Swiss-Prot
  Q8N3J1 ENTREZGENE
  Q8TAT6 ENTREZGENE
  Q9H8V2 ENTREZGENE
  Q9H964 ENTREZGENE
  Q9NWR5 ENTREZGENE
  Q9P229 ENTREZGENE
UniProt Secondary Q8N3J1 UniProtKB/Swiss-Prot
  Q9H8V2 UniProtKB/Swiss-Prot
  Q9H964 UniProtKB/Swiss-Prot
  Q9NWR5 UniProtKB/Swiss-Prot
  Q9P229 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-07-07 NPLOC4  NPL4 homolog, ubiquitin recognition factor    nuclear protein localization 4 homolog (S. cerevisiae)  Symbol and/or name change 5135510 APPROVED