NPLOC4 (NPL4 homolog, ubiquitin recognition factor) - Rat Genome Database

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Gene: NPLOC4 (NPL4 homolog, ubiquitin recognition factor) Homo sapiens
Analyze
Symbol: NPLOC4
Name: NPL4 homolog, ubiquitin recognition factor
RGD ID: 735438
HGNC Page HGNC:18261
Description: Predicted to enable ubiquitin binding activity and ubiquitin protein ligase binding activity. Predicted to contribute to K48-linked polyubiquitin modification-dependent protein binding activity and K63-linked polyubiquitin modification-dependent protein binding activity. Involved in negative regulation of RIG-I signaling pathway; negative regulation of type I interferon production; and proteolysis involved in protein catabolic process. Located in nucleus. Part of UFD1-NPL4 complex and VCP-NPL4-UFD1 AAA ATPase complex.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: FLJ20657; FLJ23742; homolog of yeast nuclear protein localization 4; KIAA1499; NPL4; NPLOC4 ubiquitin recognition factor; nuclear protein localization 4 homolog; nuclear protein localization protein 4 homolog
RGD Orthologs
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381781,556,885 - 81,637,112 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1781,556,887 - 81,648,465 (-)EnsemblGRCh38hg38GRCh38
GRCh371779,523,911 - 79,604,138 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361777,134,357 - 77,214,543 (-)NCBINCBI36Build 36hg18NCBI36
Build 341777,134,358 - 77,214,493NCBI
Celera1776,168,272 - 76,249,182 (-)NCBICelera
Cytogenetic Map17q25.3NCBI
HuRef1774,971,514 - 75,050,623 (-)NCBIHuRef
CHM1_11779,610,124 - 79,690,039 (-)NCBICHM1_1
T2T-CHM13v2.01782,474,164 - 82,554,047 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10811609   PMID:10819331   PMID:11574150   PMID:12477932   PMID:12644454   PMID:12665801   PMID:14702039   PMID:15371428   PMID:15489334   PMID:16196087   PMID:16234241   PMID:16322459  
PMID:16344560   PMID:16364241   PMID:16751776   PMID:17070805   PMID:17202270   PMID:17331469   PMID:17550899   PMID:17872946   PMID:18586029   PMID:18775313   PMID:19322201   PMID:19615732  
PMID:19818707   PMID:20414249   PMID:20442859   PMID:20463881   PMID:20702414   PMID:20876349   PMID:21486945   PMID:21630459   PMID:21636303   PMID:21645854   PMID:21873635   PMID:21914798  
PMID:22337587   PMID:22412018   PMID:22658674   PMID:22863883   PMID:22939629   PMID:23042607   PMID:23293021   PMID:23333620   PMID:23798571   PMID:24019527   PMID:24160817   PMID:24163370  
PMID:24248593   PMID:24429874   PMID:24457600   PMID:25260751   PMID:25660456   PMID:25752573   PMID:25921289   PMID:25963833   PMID:26112410   PMID:26186194   PMID:26344197   PMID:26389662  
PMID:26471729   PMID:26496610   PMID:26549226   PMID:26638075   PMID:26972000   PMID:27226613   PMID:27762274   PMID:27913212   PMID:28190767   PMID:28320958   PMID:28443643   PMID:28512218  
PMID:28514442   PMID:28515276   PMID:28525741   PMID:28611215   PMID:28675297   PMID:29053956   PMID:29117863   PMID:29208956   PMID:29229926   PMID:29395067   PMID:29540532   PMID:29568061  
PMID:29599191   PMID:30335548   PMID:30344098   PMID:30833792   PMID:31091453   PMID:31164795   PMID:31177093   PMID:31280863   PMID:31300519   PMID:31478661   PMID:31623962   PMID:31722399  
PMID:31732153   PMID:32296183   PMID:32416067   PMID:32423001   PMID:32614325   PMID:32667929   PMID:32687490   PMID:32788342   PMID:32807901   PMID:32814053   PMID:33277362   PMID:33402676  
PMID:33417871   PMID:33462405   PMID:33766124   PMID:33845483   PMID:33916271   PMID:33961781   PMID:34079125   PMID:34144977   PMID:34147029   PMID:34262183   PMID:34349018   PMID:34373451  
PMID:34578187   PMID:34599178   PMID:34642328   PMID:34739333   PMID:35256949   PMID:35271311   PMID:35389758   PMID:35509820   PMID:35552390   PMID:35704671   PMID:35831314   PMID:35920641  
PMID:35944360   PMID:35961308   PMID:36087575   PMID:36114006   PMID:36168627   PMID:36180527   PMID:36215168   PMID:36244648   PMID:36300783   PMID:36517590   PMID:36543142   PMID:37071682  
PMID:37167062   PMID:37277335   PMID:37689310   PMID:37774976   PMID:37827155   PMID:37993584   PMID:38803224  


Genomics

Comparative Map Data
NPLOC4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381781,556,885 - 81,637,112 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1781,556,887 - 81,648,465 (-)EnsemblGRCh38hg38GRCh38
GRCh371779,523,911 - 79,604,138 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361777,134,357 - 77,214,543 (-)NCBINCBI36Build 36hg18NCBI36
Build 341777,134,358 - 77,214,493NCBI
Celera1776,168,272 - 76,249,182 (-)NCBICelera
Cytogenetic Map17q25.3NCBI
HuRef1774,971,514 - 75,050,623 (-)NCBIHuRef
CHM1_11779,610,124 - 79,690,039 (-)NCBICHM1_1
T2T-CHM13v2.01782,474,164 - 82,554,047 (-)NCBIT2T-CHM13v2.0
Nploc4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3911120,270,624 - 120,328,526 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl11120,271,196 - 120,328,534 (-)EnsemblGRCm39 Ensembl
GRCm3811120,379,798 - 120,437,700 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl11120,380,370 - 120,437,708 (-)EnsemblGRCm38mm10GRCm38
MGSCv3711120,241,685 - 120,298,982 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3611120,196,461 - 120,253,758 (-)NCBIMGSCv36mm8
Celera11132,115,124 - 132,172,461 (-)NCBICelera
Cytogenetic Map11E2NCBI
cM Map1184.09NCBI
Nploc4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr810106,152,756 - 106,208,306 (-)NCBIGRCr8
mRatBN7.210105,654,395 - 105,709,958 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl10105,654,812 - 105,709,913 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx10110,759,179 - 110,814,263 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.010110,222,198 - 110,277,289 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.010105,575,294 - 105,630,381 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.010109,553,518 - 109,610,087 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl10109,552,649 - 109,610,030 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.010109,148,086 - 109,198,162 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.410109,809,121 - 109,878,278 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.110109,825,236 - 109,862,213 (-)NCBI
Celera10104,200,159 - 104,255,207 (-)NCBICelera
Cytogenetic Map10q32.3NCBI
Nploc4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555061,451,337 - 1,513,455 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555061,451,337 - 1,513,455 (+)NCBIChiLan1.0ChiLan1.0
NPLOC4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21998,143,491 - 98,223,643 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan117103,043,770 - 103,123,943 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01776,012,756 - 76,092,901 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11781,713,582 - 81,785,567 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1781,713,582 - 81,788,714 (-)Ensemblpanpan1.1panPan2
NPLOC4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.19538,087 - 604,898 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl9537,840 - 603,480 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha91,142,086 - 1,207,840 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.091,133,445 - 1,199,269 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl91,131,519 - 1,198,105 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.191,158,270 - 1,223,977 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.091,284,872 - 1,349,805 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.091,363,947 - 1,429,700 (+)NCBIUU_Cfam_GSD_1.0
Nploc4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244056021,158,248 - 1,205,737 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365945,205,659 - 5,251,026 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365945,206,222 - 5,251,042 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NPLOC4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl121,251,053 - 1,285,666 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1121,251,377 - 1,285,668 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2121,102,565 - 1,128,796 (+)NCBISscrofa10.2Sscrofa10.2susScr3
NPLOC4
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11673,499,737 - 73,570,753 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1673,502,123 - 73,570,710 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607744,881,353 - 44,976,051 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Nploc4
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462480110,533,064 - 10,589,096 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462480110,531,107 - 10,589,502 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in NPLOC4
32 total Variants

Clinical Variants
Name Type Condition(s) Position(s) Clinical significance
GRCh38/hg38 17q25.3(chr17:78901959-83086677)x3 copy number gain See cases [RCV000050934] Chr17:78901959..83086677 [GRCh38]
Chr17:76898041..81044553 [GRCh37]
Chr17:74409636..78637842 [NCBI36]
Chr17:17q25.3		 pathogenic
GRCh38/hg38 17q25.3(chr17:78092236-83086677)x3 copy number gain See cases [RCV000050685] Chr17:78092236..83086677 [GRCh38]
Chr17:76088317..81044553 [GRCh37]
Chr17:73599912..78637842 [NCBI36]
Chr17:17q25.3		 pathogenic
GRCh38/hg38 17q24.3-25.3(chr17:69209079-83086677)x3 copy number gain See cases [RCV000052486] Chr17:69209079..83086677 [GRCh38]
Chr17:67205220..81044553 [GRCh37]
Chr17:64716815..78637842 [NCBI36]
Chr17:17q24.3-25.3		 pathogenic
GRCh38/hg38 17q25.3(chr17:78918650-83021095)x3 copy number gain See cases [RCV000052497] Chr17:78918650..83021095 [GRCh38]
Chr17:76914732..80978971 [GRCh37]
Chr17:74426327..78572260 [NCBI36]
Chr17:17q25.3		 pathogenic
GRCh38/hg38 17q23.2-25.3(chr17:36449220-83086677)x3 copy number gain Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000052483]|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000052483]|See cases [RCV000052483] Chr17:36449220..83086677 [GRCh38]
Chr17:58617905..81044553 [GRCh37]
Chr17:55972687..78637842 [NCBI36]
Chr17:17q23.2-25.3		 pathogenic
GRCh38/hg38 17q25.3(chr17:80328106-83086677)x1 copy number loss Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000053454]|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000053454]|See cases [RCV000053454] Chr17:80328106..83086677 [GRCh38]
Chr17:78301906..81044553 [GRCh37]
Chr17:75916501..78637842 [NCBI36]
Chr17:17q25.3		 pathogenic
GRCh38/hg38 17q25.3(chr17:81008196-83102584)x3 copy number gain See cases [RCV000138688] Chr17:81008196..83102584 [GRCh38]
Chr17:78981996..81048189 [GRCh37]
Chr17:76596591..78653749 [NCBI36]
Chr17:17q25.3		 pathogenic
GRCh38/hg38 17q25.3(chr17:81401966-83084062)x1 copy number loss See cases [RCV000142007] Chr17:81401966..83084062 [GRCh38]
Chr17:79375766..81041938 [GRCh37]
Chr17:76990361..78635227 [NCBI36]
Chr17:17q25.3		 likely pathogenic
GRCh38/hg38 17q24.3-25.3(chr17:69916435-83102552)x3 copy number gain See cases [RCV000143342] Chr17:69916435..83102552 [GRCh38]
Chr17:67912576..81048189 [GRCh37]
Chr17:65424171..78653717 [NCBI36]
Chr17:17q24.3-25.3		 pathogenic
GRCh37/hg19 17q25.3(chr17:78514452-81041938)x1 copy number loss See cases [RCV000449416] Chr17:78514452..81041938 [GRCh37]
Chr17:17q25.3		 pathogenic
GRCh37/hg19 17q25.1-25.3(chr17:73951701-81041938)x3 copy number gain See cases [RCV000447539] Chr17:73951701..81041938 [GRCh37]
Chr17:17q25.1-25.3		 pathogenic
GRCh37/hg19 17q24.2-25.3(chr17:64241326-81041938)x3 copy number gain See cases [RCV000447577] Chr17:64241326..81041938 [GRCh37]
Chr17:17q24.2-25.3		 pathogenic
GRCh37/hg19 17q25.3(chr17:79518741-79601555)x1 copy number loss See cases [RCV000446184] Chr17:79518741..79601555 [GRCh37]
Chr17:17q25.3		 benign
GRCh37/hg19 17q21.31-25.3(chr17:42580684-81085615)x3 copy number gain See cases [RCV000447823] Chr17:42580684..81085615 [GRCh37]
Chr17:17q21.31-25.3		 pathogenic
GRCh37/hg19 17p13.3-q25.3(chr17:526-81041938) copy number gain See cases [RCV000511439] Chr17:526..81041938 [GRCh37]
Chr17:17p13.3-q25.3		 pathogenic
GRCh37/hg19 17q25.1-25.3(chr17:73951701-81041938)x3 copy number gain See cases [RCV000510919] Chr17:73951701..81041938 [GRCh37]
Chr17:17q25.1-25.3		 pathogenic
NM_017921.4(NPLOC4):c.142A>C (p.Ile48Leu) single nucleotide variant not specified [RCV004311120] Chr17:81622233 [GRCh38]
Chr17:79589259 [GRCh37]
Chr17:17q25.3		 uncertain significance
GRCh37/hg19 17p13.3-q25.3(chr17:526-81041938)x3 copy number gain See cases [RCV000512441] Chr17:526..81041938 [GRCh37]
Chr17:17p13.3-q25.3		 pathogenic
GRCh37/hg19 17q24.2-25.3(chr17:67002415-81041938)x3 copy number gain See cases [RCV000512573] Chr17:67002415..81041938 [GRCh37]
Chr17:17q24.2-25.3		 pathogenic
GRCh37/hg19 17q24.1-25.3(chr17:63689671-81041938)x3 copy number gain not provided [RCV000683952] Chr17:63689671..81041938 [GRCh37]
Chr17:17q24.1-25.3		 pathogenic
GRCh37/hg19 17q25.3(chr17:76552611-81041938)x3 copy number gain not provided [RCV000683965] Chr17:76552611..81041938 [GRCh37]
Chr17:17q25.3		 likely pathogenic
GRCh37/hg19 17p13.3-q25.3(chr17:8547-81060040)x3 copy number gain not provided [RCV000739324] Chr17:8547..81060040 [GRCh37]
Chr17:17p13.3-q25.3		 pathogenic
GRCh37/hg19 17p13.3-q25.3(chr17:7214-81058310)x3 copy number gain not provided [RCV000739320] Chr17:7214..81058310 [GRCh37]
Chr17:17p13.3-q25.3		 pathogenic
GRCh37/hg19 17p13.3-q25.3(chr17:12344-81057996)x3 copy number gain not provided [RCV000739325] Chr17:12344..81057996 [GRCh37]
Chr17:17p13.3-q25.3		 pathogenic
NM_017921.4(NPLOC4):c.1680C>T (p.Gly560=) single nucleotide variant not provided [RCV000970798] Chr17:81559406 [GRCh38]
Chr17:79526432 [GRCh37]
Chr17:17q25.3		 benign
NM_017921.4(NPLOC4):c.1323G>T (p.Arg441=) single nucleotide variant not provided [RCV000972606] Chr17:81572047 [GRCh38]
Chr17:79539073 [GRCh37]
Chr17:17q25.3		 benign
NM_017921.4(NPLOC4):c.1690C>G (p.Pro564Ala) single nucleotide variant not provided [RCV000949016] Chr17:81559396 [GRCh38]
Chr17:79526422 [GRCh37]
Chr17:17q25.3		 likely benign
GRCh37/hg19 17q25.3(chr17:79496613-79693150)x3 copy number gain not provided [RCV000848240] Chr17:79496613..79693150 [GRCh37]
Chr17:17q25.3		 uncertain significance
GRCh37/hg19 17q25.3(chr17:79531886-79685043)x1 copy number loss not provided [RCV000846802] Chr17:79531886..79685043 [GRCh37]
Chr17:17q25.3		 uncertain significance
GRCh37/hg19 17q24.1-25.3(chr17:62778720-81041938)x3 copy number gain not provided [RCV000849900] Chr17:62778720..81041938 [GRCh37]
Chr17:17q24.1-25.3		 pathogenic
GRCh37/hg19 17q25.3(chr17:78608912-81041938)x3 copy number gain not provided [RCV000848418] Chr17:78608912..81041938 [GRCh37]
Chr17:17q25.3		 pathogenic
NM_017921.4(NPLOC4):c.1733C>T (p.Thr578Met) single nucleotide variant not provided [RCV000957695] Chr17:81559353 [GRCh38]
Chr17:79526379 [GRCh37]
Chr17:17q25.3		 benign
NC_000017.10:g.(?_79477716)_(80900339_?)dup duplication not provided [RCV003122586] Chr17:79477716..80900339 [GRCh37]
Chr17:17q25.3		 uncertain significance
GRCh37/hg19 17q25.1-25.3(chr17:73481509-81043199)x3 copy number gain not provided [RCV002276051] Chr17:73481509..81043199 [GRCh37]
Chr17:17q25.1-25.3		 pathogenic
NM_017921.4(NPLOC4):c.1377T>G (p.Asp459Glu) single nucleotide variant not specified [RCV004219851] Chr17:81569088 [GRCh38]
Chr17:79536114 [GRCh37]
Chr17:17q25.3		 uncertain significance
NM_017921.4(NPLOC4):c.415G>A (p.Val139Met) single nucleotide variant not specified [RCV004189892] Chr17:81610230 [GRCh38]
Chr17:79577256 [GRCh37]
Chr17:17q25.3		 uncertain significance
NM_017921.4(NPLOC4):c.1708G>A (p.Gly570Ser) single nucleotide variant not specified [RCV004144990] Chr17:81559378 [GRCh38]
Chr17:79526404 [GRCh37]
Chr17:17q25.3		 uncertain significance
NM_017921.4(NPLOC4):c.304G>A (p.Ala102Thr) single nucleotide variant not specified [RCV004092709] Chr17:81613400 [GRCh38]
Chr17:79580426 [GRCh37]
Chr17:17q25.3		 uncertain significance
NM_017921.4(NPLOC4):c.1797C>G (p.His599Gln) single nucleotide variant not specified [RCV004238973] Chr17:81559289 [GRCh38]
Chr17:79526315 [GRCh37]
Chr17:17q25.3		 uncertain significance
NM_017921.4(NPLOC4):c.355G>A (p.Gly119Arg) single nucleotide variant not specified [RCV004206571] Chr17:81613349 [GRCh38]
Chr17:79580375 [GRCh37]
Chr17:17q25.3		 uncertain significance
NM_017921.4(NPLOC4):c.1711G>A (p.Ala571Thr) single nucleotide variant not specified [RCV004240234] Chr17:81559375 [GRCh38]
Chr17:79526401 [GRCh37]
Chr17:17q25.3		 uncertain significance
NM_017921.4(NPLOC4):c.146A>G (p.Asn49Ser) single nucleotide variant not specified [RCV004084299] Chr17:81622229 [GRCh38]
Chr17:79589255 [GRCh37]
Chr17:17q25.3		 uncertain significance
NM_017921.4(NPLOC4):c.293A>G (p.Lys98Arg) single nucleotide variant not specified [RCV004218257] Chr17:81613411 [GRCh38]
Chr17:79580437 [GRCh37]
Chr17:17q25.3		 uncertain significance
NM_017921.4(NPLOC4):c.1070T>C (p.Leu357Pro) single nucleotide variant not specified [RCV004148767] Chr17:81596166 [GRCh38]
Chr17:79563192 [GRCh37]
Chr17:17q25.3		 uncertain significance
NM_017921.4(NPLOC4):c.1429G>A (p.Asp477Asn) single nucleotide variant not specified [RCV004170807] Chr17:81569036 [GRCh38]
Chr17:79536062 [GRCh37]
Chr17:17q25.3		 uncertain significance
NM_017921.4(NPLOC4):c.447G>C (p.Glu149Asp) single nucleotide variant not specified [RCV004078843] Chr17:81608811 [GRCh38]
Chr17:79575837 [GRCh37]
Chr17:17q25.3		 uncertain significance
Single allele deletion See cases [RCV003154621] Chr17:79539041..81052322 [GRCh37]
Chr17:17q25.3		 pathogenic
NM_017921.4(NPLOC4):c.1394C>A (p.Ser465Tyr) single nucleotide variant not specified [RCV004268485] Chr17:81569071 [GRCh38]
Chr17:79536097 [GRCh37]
Chr17:17q25.3		 uncertain significance
NM_017921.4(NPLOC4):c.1508C>T (p.Thr503Ile) single nucleotide variant not specified [RCV004277092] Chr17:81567475 [GRCh38]
Chr17:79534501 [GRCh37]
Chr17:17q25.3		 uncertain significance
GRCh37/hg19 17q25.3(chr17:79128754-80092824)x1 copy number loss not provided [RCV003483326] Chr17:79128754..80092824 [GRCh37]
Chr17:17q25.3		 likely pathogenic
NM_017921.4(NPLOC4):c.1657G>A (p.Glu553Lys) single nucleotide variant not specified [RCV004491055] Chr17:81565517 [GRCh38]
Chr17:79532543 [GRCh37]
Chr17:17q25.3		 uncertain significance
NM_017921.4(NPLOC4):c.198G>C (p.Leu66Phe) single nucleotide variant not specified [RCV004491056] Chr17:81622177 [GRCh38]
Chr17:79589203 [GRCh37]
Chr17:17q25.3		 uncertain significance
NM_017921.4(NPLOC4):c.59C>T (p.Ala20Val) single nucleotide variant not specified [RCV004491059] Chr17:81629762 [GRCh38]
Chr17:79596788 [GRCh37]
Chr17:17q25.3		 uncertain significance
NM_017921.4(NPLOC4):c.634G>A (p.Ala212Thr) single nucleotide variant not specified [RCV004491060] Chr17:81606711 [GRCh38]
Chr17:79573737 [GRCh37]
Chr17:17q25.3		 uncertain significance
NM_017921.4(NPLOC4):c.697G>A (p.Val233Ile) single nucleotide variant not specified [RCV004491062] Chr17:81604685 [GRCh38]
Chr17:79571711 [GRCh37]
Chr17:17q25.3		 uncertain significance
NM_017921.4(NPLOC4):c.284C>T (p.Pro95Leu) single nucleotide variant not specified [RCV004491057] Chr17:81613420 [GRCh38]
Chr17:79580446 [GRCh37]
Chr17:17q25.3		 likely benign
NM_017921.4(NPLOC4):c.641C>T (p.Thr214Met) single nucleotide variant not specified [RCV004491061] Chr17:81606704 [GRCh38]
Chr17:79573730 [GRCh37]
Chr17:17q25.3		 uncertain significance
NC_000017.10:g.(?_79477716)_(80901020_?)dup duplication not provided [RCV004581372] Chr17:79477716..80901020 [GRCh37]
Chr17:17q25.3		 uncertain significance
NM_017921.4(NPLOC4):c.1285G>A (p.Val429Ile) single nucleotide variant not specified [RCV004650308] Chr17:81572085 [GRCh38]
Chr17:79539111 [GRCh37]
Chr17:17q25.3		 likely benign
NM_017921.4(NPLOC4):c.1727C>T (p.Thr576Ile) single nucleotide variant not specified [RCV004650307] Chr17:81559359 [GRCh38]
Chr17:79526385 [GRCh37]
Chr17:17q25.3		 uncertain significance
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:8526
Count of miRNA genes:1413
Interacting mature miRNAs:1904
Transcripts:ENST00000331134, ENST00000374747, ENST00000539314, ENST00000570300, ENST00000570324, ENST00000571562, ENST00000571714, ENST00000572346, ENST00000572351, ENST00000572760, ENST00000572824, ENST00000573212, ENST00000573328, ENST00000573519, ENST00000573876, ENST00000574095, ENST00000574344, ENST00000574897, ENST00000574964, ENST00000576713, ENST00000576940
Prediction methods:Microtar, Miranda, Pita, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
407362119GWAS1011095_Hcreatinine measurement QTL GWAS1011095 (human)3e-10creatinine measurementblood creatinine measurement (CMO:0000767)178156069681560697Human
406993477GWAS642453_Hmean corpuscular hemoglobin concentration QTL GWAS642453 (human)1e-12mean corpuscular hemoglobin concentrationmean corpuscular hemoglobin concentration (CMO:0000291)178155863481558635Human
407043914GWAS692890_Hmean corpuscular volume QTL GWAS692890 (human)7e-12mean corpuscular volumemean corpuscular volume (CMO:0000038)178155863481558635Human
407383898GWAS1032874_Hobsolete_red blood cell distribution width QTL GWAS1032874 (human)5e-17obsolete_red blood cell distribution widthred blood cell distribution width- standard deviation (CMO:0003232)178155863481558635Human
407084880GWAS733856_Hserum non-albumin protein measurement QTL GWAS733856 (human)3e-10serum non-albumin protein measurementserum globulin level (CMO:0002399)178162358081623581Human
407153361GWAS802337_Hretinal vasculature measurement QTL GWAS802337 (human)1e-08retina blood vessel morphology trait (VT:0002792)178156396781563968Human
407314398GWAS963374_Hage-related hearing impairment QTL GWAS963374 (human)2e-09age-related hearing impairment178161835981618360Human
406991704GWAS640680_Hmean corpuscular hemoglobin concentration QTL GWAS640680 (human)3e-14mean corpuscular hemoglobin concentrationmean corpuscular hemoglobin concentration (CMO:0000291)178155863481558635Human
406994777GWAS643753_Hmean corpuscular volume QTL GWAS643753 (human)7e-16mean corpuscular volumemean corpuscular volume (CMO:0000038)178155863481558635Human
407006297GWAS655273_Hmean corpuscular hemoglobin QTL GWAS655273 (human)3e-11mean corpuscular hemoglobinmean corpuscular hemoglobin (CMO:0000290)178155863481558635Human
407281242GWAS930218_Hcup-to-disc ratio measurement QTL GWAS930218 (human)3e-09cup-to-disc ratio measurement178163503781635038Human
407405910GWAS1054886_Hcataract QTL GWAS1054886 (human)1e-42cataract178163680581636806Human
406905057GWAS554033_Hrefractive error QTL GWAS554033 (human)5e-16refractive error178157181581571816Human
407057511GWAS706487_Hcentral corneal thickness QTL GWAS706487 (human)5e-11central corneal thickness178160522781605228Human
407389797GWAS1038773_Hobsolete_red blood cell distribution width QTL GWAS1038773 (human)1e-11obsolete_red blood cell distribution widthred blood cell distribution width- standard deviation (CMO:0003232)178155863481558635Human
407170153GWAS819129_Hcortical surface area measurement QTL GWAS819129 (human)1e-17cerebral cortex morphology trait (VT:0000788)tibia-fibula cortical bone total cross-sectional area (CMO:0001721)178161126181611262Human
407103213GWAS752189_Hmathematical ability QTL GWAS752189 (human)8e-12mathematical ability178157578781575788Human
406970225GWAS619201_Hatrophic macular degeneration, age-related macular degeneration, wet macular degeneration QTL GWAS619201 (human)2e-11atrophic macular degeneration, age-related macular degeneration, wet macular degeneration178155979581559796Human
407088753GWAS737729_Hobsolete_red blood cell distribution width QTL GWAS737729 (human)1e-13obsolete_red blood cell distribution widthred blood cell distribution width- standard deviation (CMO:0003232)178155863481558635Human
407111799GWAS760775_Herythrocyte count QTL GWAS760775 (human)4e-21erythrocyte countred blood cell count (CMO:0000025)178155863481558635Human
407312625GWAS961601_Hage-related hearing impairment QTL GWAS961601 (human)3e-12age-related hearing impairment178155769881557699Human
407026804GWAS675780_Heye color QTL GWAS675780 (human)9e-14eye color178162978581629786Human
406934007GWAS582983_Hoptic disc size measurement QTL GWAS582983 (human)5e-25optic disc size measurement178163503781635038Human
407106036GWAS755012_Herythrocyte count QTL GWAS755012 (human)1e-17erythrocyte countred blood cell count (CMO:0000025)178155863481558635Human
407175805GWAS824781_Hnon-melanoma skin carcinoma QTL GWAS824781 (human)0.000003non-melanoma skin carcinoma178162221681622217Human
406895226GWAS544202_Herythrocyte count QTL GWAS544202 (human)1e-09erythrocyte countred blood cell count (CMO:0000025)178155863481558635Human
407208702GWAS857678_Hretinal nerve fibre layer thickness measurement QTL GWAS857678 (human)4e-22retinal nerve fibre layer thickness measurement178161644781616448Human
407000316GWAS649292_Hmean corpuscular volume QTL GWAS649292 (human)8e-14mean corpuscular volumemean corpuscular volume (CMO:0000038)178155863481558635Human
407384183GWAS1033159_Hobsolete_red blood cell distribution width QTL GWAS1033159 (human)3e-16obsolete_red blood cell distribution widthred blood cell distribution width- standard deviation (CMO:0003232)178155863481558635Human
407361028GWAS1010004_Herythrocyte count QTL GWAS1010004 (human)3e-13erythrocyte countred blood cell count (CMO:0000025)178155863481558635Human
407121920GWAS770896_Hmathematical ability QTL GWAS770896 (human)5e-16mathematical ability178161010181610102Human
407062664GWAS711640_Hred blood cell density measurement QTL GWAS711640 (human)6e-21red blood cell density measurement178155863481558635Human
407037966GWAS686942_Hvisual acuity measurement QTL GWAS686942 (human)2e-08visual acuity measurement178159751681597517Human
407317643GWAS966619_Hcortical surface area measurement QTL GWAS966619 (human)2e-17cerebral cortex morphology trait (VT:0000788)tibia-fibula cortical bone total cross-sectional area (CMO:0001721)178161126181611262Human
407173514GWAS822490_Herythrocyte measurement QTL GWAS822490 (human)3e-09erythrocyte measurementred blood cell measurement (CMO:0001356)178155863481558635Human
407405976GWAS1054952_Hobsolete_red blood cell distribution width QTL GWAS1054952 (human)2e-19obsolete_red blood cell distribution widthred blood cell distribution width- standard deviation (CMO:0003232)178155863481558635Human
407104016GWAS752992_Hmathematical ability QTL GWAS752992 (human)3e-11mathematical ability178157578781575788Human
407018774GWAS667750_Hbody height QTL GWAS667750 (human)8e-10body height (VT:0001253)body height (CMO:0000106)178155863481558635Human
407102231GWAS751207_Hmean corpuscular hemoglobin QTL GWAS751207 (human)4e-13mean corpuscular hemoglobinmean corpuscular hemoglobin (CMO:0000290)178155863481558635Human
407164828GWAS813804_Hcataract QTL GWAS813804 (human)2e-18cataract178161126181611262Human
407113117GWAS762093_Hmathematical ability QTL GWAS762093 (human)3e-14mathematical ability178157578781575788Human
407254044GWAS903020_Hglomerular filtration rate QTL GWAS903020 (human)4e-15glomerular filtration rateglomerular filtration rate (CMO:0000490)178156092781560928Human
407043480GWAS692456_HStrabismus QTL GWAS692456 (human)2e-08Strabismus178161846681618467Human
406912284GWAS561260_Hphotoreceptor cell layer thickness measurement QTL GWAS561260 (human)5e-12photoreceptor cell layer thickness measurement178162380981623810Human
407149593GWAS798569_Hcataract QTL GWAS798569 (human)2e-12cataract178159790481597905Human
407236376GWAS885352_Hlifestyle measurement, anxiety disorder measurement QTL GWAS885352 (human)9e-11lifestyle measurement, anxiety disorder measurement178163386081633861Human
407208999GWAS857975_Hganglion cell inner plexiform layer thickness measurement QTL GWAS857975 (human)2e-29ganglion cell inner plexiform layer thickness measurement178161644781616448Human
407115431GWAS764407_Hmean reticulocyte volume QTL GWAS764407 (human)5e-11reticulocyte morphology trait (VT:0002424)mean corpuscular volume (CMO:0000038)178155863481558635Human
406990887GWAS639863_Hage-related macular degeneration, COVID-19 QTL GWAS639863 (human)3e-12age-related macular degeneration, COVID-19178155979581559796Human
407005607GWAS654583_Hintraocular pressure measurement QTL GWAS654583 (human)7e-12intraocular pressure measurement178159001781590018Human
407116460GWAS765436_Hmean corpuscular volume QTL GWAS765436 (human)4e-12mean corpuscular volumemean corpuscular volume (CMO:0000038)178155863481558635Human
407151788GWAS800764_HMyopia QTL GWAS800764 (human)8e-13Myopia178156396781563968Human
407265839GWAS914815_Hretinal vasculature measurement QTL GWAS914815 (human)0.0000003retina blood vessel morphology trait (VT:0002792)178159790481597905Human
407011881GWAS660857_Hrefractive error QTL GWAS660857 (human)7e-19refractive error178157181581571816Human
407181364GWAS830340_Hcataract QTL GWAS830340 (human)1e-13cataract178161634581616346Human
406928562GWAS577538_HAstigmatism QTL GWAS577538 (human)2e-09Astigmatism178158222481582225Human
406987191GWAS636167_Hage-related macular degeneration, COVID-19 QTL GWAS636167 (human)2e-12age-related macular degeneration, COVID-19178155979581559796Human
407064885GWAS713861_Hred blood cell density measurement QTL GWAS713861 (human)4e-20red blood cell density measurement178155863481558635Human
407046069GWAS695045_Hbody mass index QTL GWAS695045 (human)4e-08body mass indexbody mass index (BMI) (CMO:0000105)178162978581629786Human
407105208GWAS754184_Hself reported educational attainment QTL GWAS754184 (human)4e-10self reported educational attainment178161010181610102Human
407377719GWAS1026695_Hobsolete_red blood cell distribution width QTL GWAS1026695 (human)8e-09obsolete_red blood cell distribution widthred blood cell distribution width- standard deviation (CMO:0003232)178155863481558635Human

Markers in Region
SHGC-58033  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371779,525,681 - 79,525,912UniSTSGRCh37
Build 361777,136,125 - 77,136,356RGDNCBI36
Celera1776,170,040 - 76,170,271RGD
Cytogenetic Map17qterUniSTS
HuRef1774,973,282 - 74,973,513UniSTS
TNG Radiation Hybrid Map1736962.0UniSTS
RH79771  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371779,524,413 - 79,524,646UniSTSGRCh37
Build 361777,134,857 - 77,135,090RGDNCBI36
Celera1776,168,772 - 76,169,005RGD
Cytogenetic Map17qterUniSTS
HuRef1774,972,014 - 74,972,247UniSTS
SHGC-148718  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371779,579,399 - 79,579,692UniSTSGRCh37
Build 361777,189,841 - 77,190,134RGDNCBI36
Celera1776,224,074 - 76,224,367RGD
Cytogenetic Map17qterUniSTS
HuRef1775,026,001 - 75,026,294UniSTS
TNG Radiation Hybrid Map1736943.0UniSTS
SHGC-156246  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371779,532,710 - 79,533,022UniSTSGRCh37
Build 361777,143,152 - 77,143,464RGDNCBI36
Celera1776,177,085 - 76,177,397RGD
Cytogenetic Map17qterUniSTS
HuRef1774,980,323 - 74,980,635UniSTS
TNG Radiation Hybrid Map1736968.0UniSTS
RH46882  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371779,523,979 - 79,524,168UniSTSGRCh37
Build 361777,134,423 - 77,134,612RGDNCBI36
Celera1776,168,338 - 76,168,527RGD
Cytogenetic Map17qterUniSTS
HuRef1774,971,580 - 74,971,769UniSTS
GeneMap99-GB4 RH Map17527.2UniSTS
NCBI RH Map17810.0UniSTS
STS-N27028  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371779,604,978 - 79,605,157UniSTSGRCh37
Build 361777,215,383 - 77,215,562RGDNCBI36
Cytogenetic Map17qterUniSTS
GeneMap99-GB4 RH Map17527.2UniSTS
NCBI RH Map17810.0UniSTS
D10S16   No map positions available.
GDB:631802  
Human AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map10q25.3UniSTS
Cytogenetic Map15q13UniSTS
Cytogenetic Map11p15.4UniSTS
Cytogenetic Map1p36.32UniSTS
Cytogenetic Map14q13.2UniSTS
Cytogenetic Map19q13.41UniSTS
Cytogenetic Map1q32UniSTS
Cytogenetic Map17q11UniSTS
Cytogenetic MapXp11.23UniSTS
Cytogenetic Map12q13.13UniSTS
Cytogenetic Map14q23.3UniSTS
Cytogenetic Map3q27UniSTS
Cytogenetic Map19q13.12UniSTS
Cytogenetic Map19q13.2UniSTS
Cytogenetic Map9p13.3-p12UniSTS
Cytogenetic Map16q11.2UniSTS
Cytogenetic Map3q12.3UniSTS
Cytogenetic Map14q22UniSTS
Cytogenetic Map5q21-q22UniSTS
Cytogenetic Map5q23.3UniSTS
Cytogenetic Map2q33-q34UniSTS
Cytogenetic Map4q31.3UniSTS
Cytogenetic Map1p31.3UniSTS
Cytogenetic Map14q11.2UniSTS
Cytogenetic Map19q13.43UniSTS
Cytogenetic MapXp11.3UniSTS
Cytogenetic Map4q12UniSTS
Cytogenetic Map8p11.21UniSTS
Cytogenetic Map3p21.31UniSTS
Cytogenetic Map19p13.2UniSTS
Cytogenetic Map5q14.1UniSTS
Cytogenetic Map17q22.2UniSTS
Cytogenetic Map22q13.1UniSTS
Cytogenetic Map19p13UniSTS
Cytogenetic Map22q13.31-q13.33UniSTS
Cytogenetic Map14q24.3UniSTS
Cytogenetic Map11q13UniSTS
Cytogenetic Map10p11UniSTS
Cytogenetic Map7q22.1UniSTS
Cytogenetic Map19q13.32UniSTS
Cytogenetic Map1q44UniSTS
Cytogenetic Map15q22.31UniSTS
Cytogenetic Map2q31.1UniSTS
Cytogenetic Map5q31.1UniSTS
Cytogenetic Map1p36.31UniSTS
Cytogenetic MapXq24UniSTS
Cytogenetic Map19q13.4UniSTS
Cytogenetic Map16p13.3UniSTS
Cytogenetic Map19p12UniSTS
Cytogenetic Map3p25.3UniSTS
Cytogenetic Map1q21.2UniSTS
Cytogenetic Map12q22UniSTS
Cytogenetic Map19q13.3UniSTS
Cytogenetic Map1q21-q23UniSTS
Cytogenetic Map16p11.2UniSTS
Cytogenetic Map1p35.3UniSTS
Cytogenetic Map1p35.1UniSTS
Cytogenetic Map1p34.3UniSTS
Cytogenetic Map1p36.22UniSTS
Cytogenetic Map1p35.3-p33UniSTS
Cytogenetic Map1q21UniSTS
Cytogenetic Map17q24.1UniSTS
Cytogenetic Map7q36.3UniSTS
Cytogenetic Map17q11.2UniSTS
Cytogenetic Map22q13.2UniSTS
Cytogenetic Map22q11.23UniSTS
Cytogenetic Map18q11.2UniSTS
Cytogenetic Map1p31UniSTS
Cytogenetic Map19q13.1UniSTS
Cytogenetic Map8p22UniSTS
Cytogenetic Map1p13.3UniSTS
Cytogenetic Map20p13UniSTS
Cytogenetic Map10q24.32UniSTS
Cytogenetic Map2q33.2UniSTS
Cytogenetic Map6q23.3UniSTS
Cytogenetic Map21q22.3UniSTS
Cytogenetic Map2q14.3UniSTS
Cytogenetic Map1p22.2UniSTS
Cytogenetic Map17q22UniSTS
Cytogenetic Map2q35UniSTS
Cytogenetic Map22q11.21UniSTS
Cytogenetic Map17qterUniSTS
Cytogenetic Map16q22.2UniSTS
Cytogenetic MapXp22.33UniSTS
Cytogenetic MapYp11.32UniSTS
Cytogenetic Map18q12.1UniSTS
Cytogenetic Map10p15.1UniSTS
Cytogenetic Map19p13.11UniSTS
Cytogenetic Map15q23UniSTS
Cytogenetic MapXp11.22UniSTS
Cytogenetic Map6p21.1UniSTS
Cytogenetic Map2p16.1UniSTS
Cytogenetic Map1p32UniSTS
Cytogenetic Map11q13.4UniSTS
Cytogenetic Map8q13UniSTS
Cytogenetic Map5q31.2-q34UniSTS
Cytogenetic Map2q11.2UniSTS
Cytogenetic Map1p36.13UniSTS
Cytogenetic Map3q21-q22UniSTS
Cytogenetic Map11q22-q23UniSTS
Cytogenetic Map3q21UniSTS
Cytogenetic Map7p11.2UniSTS
Cytogenetic Map1p32.3UniSTS
Cytogenetic Map14q21UniSTS
Cytogenetic Map16q22UniSTS
Cytogenetic Map22q13.33UniSTS
Cytogenetic Map1q25.3UniSTS
Cytogenetic Map19q13UniSTS
Cytogenetic Map7q11.23UniSTS
Cytogenetic Map19q13.42UniSTS
Cytogenetic Map2p11.2UniSTS
Cytogenetic Map1q32.1UniSTS
Cytogenetic Map12q24.31UniSTS
Cytogenetic Map11p15.5UniSTS
Cytogenetic Map6q25.1UniSTS
Cytogenetic Map1p36-p35UniSTS
Cytogenetic Map17q11-q21UniSTS
Cytogenetic Map21q22.1UniSTS
Cytogenetic MapXq13.1UniSTS
Cytogenetic Map6p21.31UniSTS
Cytogenetic Map4q13.3UniSTS
Cytogenetic Map19p13.3UniSTS
Cytogenetic Map18p11.22-p11.21UniSTS
Cytogenetic Map1q41UniSTS
Cytogenetic Map3q23UniSTS
Cytogenetic Map1p36.21UniSTS
Cytogenetic Map6q21UniSTS
Cytogenetic Map2p14UniSTS
Cytogenetic Map17q21UniSTS
Cytogenetic Map2q12.2UniSTS
Cytogenetic Map7p22.1UniSTS
Cytogenetic Map2q21UniSTS
Cytogenetic Map3p14.3UniSTS
Cytogenetic Map16p13.2UniSTS
Cytogenetic Map1p13.2UniSTS
Cytogenetic MapXq26.3UniSTS
Cytogenetic Map15q24.1UniSTS
Cytogenetic Map4q22.1UniSTS
Cytogenetic Map17q21.2UniSTS
Cytogenetic Map16q22.1UniSTS
Cytogenetic Map8q12.1UniSTS
Cytogenetic Map12q14.3UniSTS
Cytogenetic Map2q36.3UniSTS
Cytogenetic Map16q23.1UniSTS
Cytogenetic Map9q32UniSTS
Cytogenetic Map2q12UniSTS
Cytogenetic Map11cen-q12UniSTS
Cytogenetic Map20q11.22UniSTS
Cytogenetic Map15q13.3UniSTS
Cytogenetic MapXp21.1UniSTS
Cytogenetic Map5q31UniSTS
Cytogenetic Map20p11.2UniSTS
Cytogenetic Map3p22.3UniSTS
Cytogenetic Map17q21.31UniSTS
Cytogenetic Map15q15.1UniSTS
Cytogenetic Map9p13.3UniSTS
Cytogenetic Map2p24.1UniSTS
D17S1511E  
Human AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map17qterUniSTS
D10S16  
Human AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map3p24.2UniSTS
Cytogenetic Map21q21.3UniSTS
Cytogenetic Map1p36.33UniSTS
Cytogenetic Map16q24.1UniSTS
Cytogenetic Map5q31UniSTS
Cytogenetic Map17p11.2UniSTS
Cytogenetic Map11q24.2UniSTS
Cytogenetic Map5q23.3-q31.1UniSTS
Cytogenetic Map7q32UniSTS
Cytogenetic Map1q21-q23UniSTS
Cytogenetic MapXp11.23UniSTS
Cytogenetic Map2q11.2-q12UniSTS
Cytogenetic Map7p13UniSTS
Cytogenetic Map19q13.4UniSTS
Cytogenetic Map17q25.1UniSTS
Cytogenetic Map1p36.21UniSTS
Cytogenetic Map3p22UniSTS
Cytogenetic Map19p13.2UniSTS
Cytogenetic Map2p12UniSTS
Cytogenetic Map19q13.12UniSTS
Cytogenetic Map9p13.3-p12UniSTS
Cytogenetic Map3p21.1UniSTS
Cytogenetic Map5p13.1UniSTS
Cytogenetic Map14q24.3UniSTS
Cytogenetic Map2p25.2UniSTS
Cytogenetic Map5q21-q22UniSTS
Cytogenetic Map2p22.1UniSTS
Cytogenetic Map1q32.3UniSTS
Cytogenetic Map1p36.11UniSTS
Cytogenetic Map18q12UniSTS
Cytogenetic Map19q13.41UniSTS
Cytogenetic Map17q21UniSTS
Cytogenetic Map3q27.3UniSTS
Cytogenetic Map2q37.3UniSTS
Cytogenetic Map19p13.3UniSTS
Cytogenetic Map2p15UniSTS
Cytogenetic Map20q13.32UniSTS
Cytogenetic Map10q26UniSTS
Cytogenetic Map19q13.3UniSTS
Cytogenetic Map7q21.13UniSTS
Cytogenetic Map1p33UniSTS
Cytogenetic Map1p35.1UniSTS
Cytogenetic Map9q22.3UniSTS
Cytogenetic Map17q11.2UniSTS
Cytogenetic Map12q13.2UniSTS
Cytogenetic Map22q13.31-q13.33UniSTS
Cytogenetic Map1q24.1UniSTS
Cytogenetic Map7q32.2UniSTS
Cytogenetic Map19q13.43UniSTS
Cytogenetic Map1q42.11UniSTS
Cytogenetic Map19p13.11UniSTS
Cytogenetic Map12q24.31UniSTS
Cytogenetic Map19p13.1UniSTS
Cytogenetic Map11q13.5UniSTS
Cytogenetic Map11q24UniSTS
Cytogenetic Map2q11.2-q12.1UniSTS
Cytogenetic Map3q21.2UniSTS
Cytogenetic Map19q13.1UniSTS
Cytogenetic Map19p13UniSTS
Cytogenetic Map8p11.21UniSTS
Cytogenetic Map17p13.2UniSTS
Cytogenetic Map16p13.3UniSTS
Cytogenetic Map20q12UniSTS
Cytogenetic Map2q13UniSTS
Cytogenetic Map5q31.1UniSTS
Cytogenetic Map17q22.2UniSTS
Cytogenetic Map18q21UniSTS
Cytogenetic Map11q14.2UniSTS
Cytogenetic Map16q22.1UniSTS
Cytogenetic Map4q34UniSTS
Cytogenetic Map2p22-p21UniSTS
Cytogenetic Map10q26.3UniSTS
Cytogenetic Map7q22.1UniSTS
Cytogenetic Map11q13.4UniSTS
Cytogenetic Map2q37.1UniSTS
Cytogenetic Map17q21.31UniSTS
Cytogenetic Map1p36.23UniSTS
Cytogenetic Map7p22.2UniSTS
Cytogenetic Map12q24.13UniSTS
Cytogenetic Map8p21.2UniSTS
Cytogenetic Map22q13.33UniSTS
Cytogenetic Map14q32.12UniSTS
Cytogenetic Map2q31.1UniSTS
Cytogenetic Map1p36.31UniSTS
Cytogenetic Map1p32.3UniSTS
Cytogenetic MapXq26.3UniSTS
Cytogenetic Map8p23.1UniSTS
Cytogenetic Map6q13UniSTS
Cytogenetic Map3p21.31UniSTS
Cytogenetic Map9p13.2UniSTS
Cytogenetic Map17q25UniSTS
Cytogenetic Map9q22.2UniSTS
Cytogenetic Map14q32.33UniSTS
Cytogenetic Map1q21.3UniSTS
Cytogenetic Map13q12.11UniSTS
Cytogenetic Map16p13.13UniSTS
Cytogenetic Map11p15.4UniSTS
Cytogenetic Map7q22UniSTS
Cytogenetic Map3q21UniSTS
Cytogenetic Map11q12.3UniSTS
Cytogenetic Map22q13UniSTS
Cytogenetic Map4p16.3UniSTS
Cytogenetic Map11p15.3-p15.1UniSTS
Cytogenetic Map11q13UniSTS
Cytogenetic Map22q11.21UniSTS
Cytogenetic Map10q22.2UniSTS
Cytogenetic Map17p13.3UniSTS
Cytogenetic Map7p22.3UniSTS
Cytogenetic Map3p21UniSTS
Cytogenetic MapXp22.3UniSTS
Cytogenetic Map1q42.3UniSTS
Cytogenetic Map18q11.2UniSTS
Cytogenetic Map6p24.3UniSTS
Cytogenetic Map7q34UniSTS
Cytogenetic Map16p11.2UniSTS
Cytogenetic Map1q25UniSTS
Cytogenetic Map15q11.2UniSTS
Cytogenetic Map19p13.12UniSTS
Cytogenetic Map3q26UniSTS
Cytogenetic Map12p12.1-p11.2UniSTS
Cytogenetic Map11q23.1UniSTS
Cytogenetic Map13q14.11UniSTS
Cytogenetic Map22q13.1UniSTS
Cytogenetic Map7p15.2UniSTS
Cytogenetic Map1q21UniSTS
Cytogenetic Map10q11.22UniSTS
Cytogenetic Map5p12UniSTS
Cytogenetic Map6q21UniSTS
Cytogenetic Map9q21.13UniSTS
Cytogenetic Map5q13.2UniSTS
Cytogenetic Map19q13.2UniSTS
Cytogenetic MapXq23UniSTS
Cytogenetic Map2p21UniSTS
Cytogenetic Map22q11.1UniSTS
Cytogenetic Map16q13UniSTS
Cytogenetic Map16pUniSTS
Cytogenetic Map11q13.2UniSTS
Cytogenetic MapXp11.3UniSTS
Cytogenetic Map1q25.1UniSTS
Cytogenetic Map10q23-q24UniSTS
Cytogenetic Map20p13UniSTS
Cytogenetic Map7q31UniSTS
Cytogenetic Map6q23.3UniSTS
Cytogenetic MapXp22.2UniSTS
Cytogenetic Map9q32UniSTS
Cytogenetic Map1q32.1UniSTS
Cytogenetic Map17q25.3UniSTS
Cytogenetic Map20q11.22UniSTS
Cytogenetic Map4q35.1UniSTS
Cytogenetic Map3q21.3UniSTS
Cytogenetic Map5q12.3UniSTS
Cytogenetic Map6q25.1UniSTS
Cytogenetic Map14q24.1UniSTS
Cytogenetic Map2q33.2UniSTS
Cytogenetic Map20q13.13UniSTS
Cytogenetic Map14q23.2UniSTS
Cytogenetic Map15q24.1UniSTS
Cytogenetic Map3q23UniSTS
Cytogenetic Map8q23.1UniSTS
Cytogenetic Map2q14.3UniSTS
Cytogenetic Map20q13.33UniSTS
Cytogenetic Map21q22.11UniSTS
Cytogenetic Map5p15.1UniSTS
Cytogenetic Map15q13.1UniSTS
Cytogenetic Map15q26.1UniSTS
Cytogenetic Map7q32.1UniSTS
Cytogenetic Map8p21.3UniSTS
Cytogenetic Map1p31.1UniSTS
Cytogenetic Map17qterUniSTS
Cytogenetic Map11q13.1UniSTS
Cytogenetic Map12q22UniSTS
Cytogenetic Map16q22.2UniSTS
Cytogenetic Map14q32UniSTS
Cytogenetic MapXp22.33UniSTS
Cytogenetic MapYp11.32UniSTS
Cytogenetic Map14q24.2UniSTS
Cytogenetic Map3p25.3UniSTS
Cytogenetic Map13q34UniSTS
Cytogenetic Map10p11.23UniSTS
Cytogenetic Map15q15.2UniSTS
Cytogenetic Map8p21.1UniSTS
Cytogenetic Map22q12.2UniSTS
Cytogenetic Map15q22.2UniSTS
Cytogenetic Map15q21UniSTS
Cytogenetic Map6p21.31UniSTS
Cytogenetic Map10q23.1UniSTS
Cytogenetic Map1p36.2UniSTS
Cytogenetic Map2p16.1UniSTS
Cytogenetic Map22q11.2UniSTS
Cytogenetic Map17q23.3UniSTS
Cytogenetic Map12q13.13UniSTS
Cytogenetic Map20q12-q13.12UniSTS
Cytogenetic Map3q26.33UniSTS
Cytogenetic Map5q31.2-q34UniSTS
Cytogenetic Map5q31.2UniSTS
Cytogenetic Map8q24.3UniSTS
Cytogenetic Map5q35.3UniSTS
Cytogenetic MapXq13-q21UniSTS
Cytogenetic Map7q11.23UniSTS
Cytogenetic Map1pter-q31.3UniSTS
Cytogenetic Map15q21.1UniSTS
Cytogenetic Map3q13.33UniSTS
Cytogenetic MapXq13.1UniSTS
Cytogenetic Map3p23-p21UniSTS
Cytogenetic Map11q22-q23UniSTS
Cytogenetic Map1p34.1UniSTS
Cytogenetic Map2q21.1UniSTS
Cytogenetic Map6p21.3UniSTS
Cytogenetic Map7p11.2UniSTS
Cytogenetic Map7p22.1UniSTS
Cytogenetic Map17q21.33UniSTS
Cytogenetic Map14q32.31UniSTS
Cytogenetic Map10q11.21UniSTS
Cytogenetic Map16q22UniSTS
Cytogenetic Map2q24UniSTS
Cytogenetic Map1q23.3UniSTS
Cytogenetic Map3q13.13UniSTS
Cytogenetic Map19p12UniSTS
Cytogenetic Map16p13.1UniSTS
Cytogenetic Map19q13.11UniSTS
Cytogenetic MapXp22.12UniSTS
Cytogenetic Map9q21.33UniSTS
Cytogenetic Map5q32UniSTS
Cytogenetic Map16q11.2UniSTS
Cytogenetic Map10p12.31UniSTS
Cytogenetic Map3q25.33UniSTS
Cytogenetic Map8q21.2UniSTS
Cytogenetic Map10q26.13UniSTS
Cytogenetic Map10q25.3UniSTS
Cytogenetic Map15q14-q15UniSTS
Cytogenetic Map8p11.2UniSTS
Cytogenetic Map1p34.3UniSTS
Cytogenetic Map4p15.2UniSTS
Cytogenetic Map17q12UniSTS
Cytogenetic Map7p15.3UniSTS
Cytogenetic Map7p21.1UniSTS
Cytogenetic Map1p36.32UniSTS
Cytogenetic Map1p36.1-p34UniSTS
Cytogenetic Map4p13UniSTS
Cytogenetic Map7q31.1-q31.2UniSTS
Cytogenetic Map8q22.2UniSTS
Cytogenetic Map15q21.1-q21.2UniSTS
Cytogenetic Map16q21UniSTS
Cytogenetic MapXq12UniSTS
Cytogenetic Map7q36.1UniSTS
Cytogenetic Map7p14.1UniSTS
Cytogenetic Map6p23UniSTS
Cytogenetic Map3p11.1UniSTS
Cytogenetic Map15q21.3UniSTS
Cytogenetic Map13q12UniSTS
Cytogenetic Map12q23.2UniSTS
Cytogenetic Map22q13.2UniSTS
Cytogenetic Map16q22.3UniSTS
Cytogenetic MapXq21UniSTS
Cytogenetic Map15q15UniSTS
Cytogenetic Map4q25UniSTS
Cytogenetic Map3q22.1UniSTS
Cytogenetic Map1q25.2UniSTS
Cytogenetic Map11q14.3UniSTS
Cytogenetic Map10q21.3UniSTS
Cytogenetic Map14q11.2UniSTS
Cytogenetic Map15q24.2UniSTS
Cytogenetic Map2p14UniSTS
Cytogenetic Map7q11.1UniSTS
Cytogenetic Map6p21UniSTS
Cytogenetic Map2p25.1-p24.1UniSTS
Cytogenetic Map16p12.2UniSTS
Cytogenetic Map4q13.3UniSTS
Cytogenetic Map12p11.21UniSTS
Cytogenetic Map18q21.3UniSTS
Cytogenetic Map17p13UniSTS
Cytogenetic Map8q12UniSTS
Cytogenetic Map2q35UniSTS
Cytogenetic Map21q22.13UniSTS
Cytogenetic Map6p21.1UniSTS
Cytogenetic Map17q24.3UniSTS
Cytogenetic Map1p21UniSTS
Cytogenetic MapXq24UniSTS
Cytogenetic Map2q34UniSTS
Cytogenetic Map8p11.23UniSTS
Cytogenetic Map1p36.13UniSTS
Cytogenetic Map9q34.3UniSTS
Cytogenetic Map11q23.3UniSTS
Cytogenetic Map9q33.3UniSTS
Cytogenetic Map16p12UniSTS
Cytogenetic Map2p23.3UniSTS
Cytogenetic Map20q11.23UniSTS
Cytogenetic Map12q15UniSTS
Cytogenetic Map2q12.2UniSTS
Cytogenetic Map8p12UniSTS
Cytogenetic Map7q22.3UniSTS
Cytogenetic Map19q13.42UniSTS
Cytogenetic Map4q35UniSTS
Cytogenetic Map19q13.1-q13.2UniSTS
Cytogenetic Map16p13.12UniSTS
Cytogenetic Map9q34.1UniSTS
Cytogenetic Map7q36.2UniSTS
Cytogenetic Map3p23UniSTS
Cytogenetic Map6p25UniSTS
Cytogenetic Map9q22.1-q22.2UniSTS
Cytogenetic Map3q26.1-q26.2UniSTS
Cytogenetic Map5q31-q34UniSTS
Cytogenetic Map9q34UniSTS
Cytogenetic Map12p13UniSTS
Cytogenetic Map4q26UniSTS
Cytogenetic Map4p15.3UniSTS
Cytogenetic Map2q33.1UniSTS
Cytogenetic Map15q15.1UniSTS
Cytogenetic Map1p32-p31UniSTS
Cytogenetic Map7q36.3UniSTS
Cytogenetic Map4q22.1UniSTS
Cytogenetic Map3q13.2UniSTS
Cytogenetic Map2q33.3UniSTS
Cytogenetic Map8p22UniSTS
Cytogenetic Map22q11.23UniSTS
Cytogenetic Map19q13.32UniSTS
Cytogenetic Map18q21.32UniSTS
Cytogenetic Map15q26.3UniSTS
Cytogenetic Map12q14.2UniSTS
Cytogenetic Map2q31.1-q31.2UniSTS
Cytogenetic Map12q13.11UniSTS
Cytogenetic Map9p13.3UniSTS
Cytogenetic Map9q34.11UniSTS
Cytogenetic Map6p12.3UniSTS
Cytogenetic Map6q22.32UniSTS
Cytogenetic Map5q15UniSTS
Cytogenetic Map3p14.2UniSTS
Cytogenetic Map3p25.1UniSTS
Cytogenetic Map3q27.1UniSTS
Cytogenetic Map2q36.1UniSTS
Cytogenetic Map2q37UniSTS
Cytogenetic Map19q13.31UniSTS
Cytogenetic Map4q23UniSTS
Cytogenetic Map16q24.3UniSTS
Cytogenetic Map15q22.31UniSTS
Cytogenetic Map10q22.1UniSTS
Cytogenetic Map18q11.1UniSTS
Cytogenetic Map16q23.2UniSTS
Cytogenetic Map12q13UniSTS
Cytogenetic Map18q21.1UniSTS
Cytogenetic Map12q12-q13UniSTS
Cytogenetic Map9p22.3UniSTS
Cytogenetic Map6p21.2UniSTS
Cytogenetic Map6p22.1UniSTS
Cytogenetic Map11p15.1UniSTS
Cytogenetic Map19qterUniSTS
Cytogenetic Map20q13.3-qterUniSTS
Cytogenetic Map12q14.1UniSTS
Cytogenetic Map7p11UniSTS
Cytogenetic Map7p15UniSTS
Cytogenetic Map1p13.3UniSTS
Cytogenetic Map16p12.3UniSTS
Cytogenetic Map3q29UniSTS
Cytogenetic Map3p21.3UniSTS
Cytogenetic Map13q14UniSTS
Cytogenetic Map17pUniSTS
Cytogenetic Map11p14.1UniSTS
Cytogenetic Map2p13.2UniSTS
Cytogenetic Map15q25.2UniSTS
Cytogenetic Map10q11.23UniSTS
Cytogenetic Map20q13.12UniSTS
Cytogenetic Map13q22.1UniSTS
Cytogenetic Map17p13.1UniSTS
Cytogenetic Map14q23.3UniSTS
Cytogenetic Map3q26.2UniSTS


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001369698 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_017921 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_130139 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_130140 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011524979 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011524980 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011524982 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047436365 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047436366 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047436367 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047436368 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054316628 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054316629 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054316630 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054316631 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054316632 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054316633 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054316634 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054316635 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001752557 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_934501 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_934502 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AB040932 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC137896 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC139530 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK000664 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK023046 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK023272 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK024398 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK074322 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK294473 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK311741 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL133629 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL834300 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC013406 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC025930 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BU542911 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH471099 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CK903591 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CP068261 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DA998574 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DC322260 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DQ587272 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DQ587568 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HY116973 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HY179409 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENST00000331134   ⟹   ENSP00000331487
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1781,556,887 - 81,637,112 (-)Ensembl
Ensembl Acc Id: ENST00000374747   ⟹   ENSP00000363879
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1781,561,766 - 81,637,060 (-)Ensembl
Ensembl Acc Id: ENST00000570300
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1781,608,811 - 81,648,465 (-)Ensembl
Ensembl Acc Id: ENST00000570324   ⟹   ENSP00000461478
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1781,604,572 - 81,613,402 (-)Ensembl
Ensembl Acc Id: ENST00000571562
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1781,612,679 - 81,613,347 (-)Ensembl
Ensembl Acc Id: ENST00000571714   ⟹   ENSP00000460465
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1781,559,182 - 81,572,073 (-)Ensembl
Ensembl Acc Id: ENST00000572346
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1781,559,064 - 81,566,985 (-)Ensembl
Ensembl Acc Id: ENST00000572351
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1781,588,091 - 81,597,319 (-)Ensembl
Ensembl Acc Id: ENST00000572760   ⟹   ENSP00000467400
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1781,558,789 - 81,566,602 (-)Ensembl
Ensembl Acc Id: ENST00000572824   ⟹   ENSP00000458384
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1781,559,268 - 81,569,083 (-)Ensembl
Ensembl Acc Id: ENST00000573212   ⟹   ENSP00000459462
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1781,559,316 - 81,569,102 (-)Ensembl
Ensembl Acc Id: ENST00000573328
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1781,604,609 - 81,608,912 (-)Ensembl
Ensembl Acc Id: ENST00000573519   ⟹   ENSP00000459457
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1781,559,091 - 81,569,064 (-)Ensembl
Ensembl Acc Id: ENST00000573876   ⟹   ENSP00000465247
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1781,559,125 - 81,566,635 (-)Ensembl
Ensembl Acc Id: ENST00000574095
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1781,636,397 - 81,637,110 (-)Ensembl
Ensembl Acc Id: ENST00000574344
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1781,604,664 - 81,614,381 (-)Ensembl
Ensembl Acc Id: ENST00000574897   ⟹   ENSP00000461543
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1781,564,909 - 81,637,079 (-)Ensembl
Ensembl Acc Id: ENST00000574964
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1781,559,014 - 81,560,889 (-)Ensembl
Ensembl Acc Id: ENST00000576713
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1781,559,396 - 81,572,108 (-)Ensembl
Ensembl Acc Id: ENST00000576940
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1781,564,213 - 81,567,495 (-)Ensembl
Ensembl Acc Id: ENST00000625705   ⟹   ENSP00000486640
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1781,608,801 - 81,629,875 (-)Ensembl
Ensembl Acc Id: ENST00000705719   ⟹   ENSP00000516165
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1781,556,887 - 81,637,112 (-)Ensembl
RefSeq Acc Id: NM_001369698   ⟹   NP_001356627
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381781,556,887 - 81,637,112 (-)NCBI
T2T-CHM13v2.01782,474,166 - 82,554,047 (-)NCBI
Sequence:
RefSeq Acc Id: NM_017921   ⟹   NP_060391
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381781,556,887 - 81,637,112 (-)NCBI
GRCh371779,523,913 - 79,604,138 (-)RGD
Build 361777,134,357 - 77,214,543 (-)NCBI Archive
Celera1776,168,272 - 76,249,182 (-)RGD
HuRef1774,971,514 - 75,050,623 (-)RGD
CHM1_11779,610,122 - 79,690,080 (-)NCBI
T2T-CHM13v2.01782,474,166 - 82,554,047 (-)NCBI
Sequence:
RefSeq Acc Id: NR_130139
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381781,556,885 - 81,577,433 (-)NCBI
CHM1_11779,610,122 - 79,630,670 (-)NCBI
T2T-CHM13v2.01782,474,164 - 82,494,720 (-)NCBI
Sequence:
RefSeq Acc Id: NR_130140
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381781,556,887 - 81,566,602 (-)NCBI
CHM1_11779,610,122 - 79,619,872 (-)NCBI
T2T-CHM13v2.01782,474,166 - 82,483,895 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011524979   ⟹   XP_011523281
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381781,565,285 - 81,637,112 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011524980   ⟹   XP_011523282
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381781,556,885 - 81,637,112 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011524982   ⟹   XP_011523284
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381781,564,055 - 81,637,112 (-)NCBI
Sequence:
RefSeq Acc Id: XM_047436365   ⟹   XP_047292321
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381781,556,885 - 81,637,112 (-)NCBI
RefSeq Acc Id: XM_047436366   ⟹   XP_047292322
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381781,564,056 - 81,637,112 (-)NCBI
RefSeq Acc Id: XM_047436367   ⟹   XP_047292323
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381781,567,426 - 81,637,112 (-)NCBI
RefSeq Acc Id: XM_047436368   ⟹   XP_047292324
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381781,556,885 - 81,610,228 (-)NCBI
RefSeq Acc Id: XM_054316628   ⟹   XP_054172603
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01782,482,578 - 82,554,047 (-)NCBI
RefSeq Acc Id: XM_054316629   ⟹   XP_054172604
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01782,474,164 - 82,554,047 (-)NCBI
RefSeq Acc Id: XM_054316630   ⟹   XP_054172605
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01782,474,164 - 82,554,047 (-)NCBI
RefSeq Acc Id: XM_054316631   ⟹   XP_054172606
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01782,478,454 - 82,554,047 (-)NCBI
RefSeq Acc Id: XM_054316632   ⟹   XP_054172607
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01782,481,361 - 82,554,047 (-)NCBI
RefSeq Acc Id: XM_054316633   ⟹   XP_054172608
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01782,481,362 - 82,554,047 (-)NCBI
RefSeq Acc Id: XM_054316634   ⟹   XP_054172609
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01782,484,719 - 82,554,047 (-)NCBI
RefSeq Acc Id: XM_054316635   ⟹   XP_054172610
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01782,474,164 - 82,527,487 (-)NCBI
Protein Sequences
Protein RefSeqs NP_001356627 (Get FASTA)   NCBI Sequence Viewer  
  NP_060391 (Get FASTA)   NCBI Sequence Viewer  
  XP_011523281 (Get FASTA)   NCBI Sequence Viewer  
  XP_011523282 (Get FASTA)   NCBI Sequence Viewer  
  XP_011523284 (Get FASTA)   NCBI Sequence Viewer  
  XP_047292321 (Get FASTA)   NCBI Sequence Viewer  
  XP_047292322 (Get FASTA)   NCBI Sequence Viewer  
  XP_047292323 (Get FASTA)   NCBI Sequence Viewer  
  XP_047292324 (Get FASTA)   NCBI Sequence Viewer  
  XP_054172603 (Get FASTA)   NCBI Sequence Viewer  
  XP_054172604 (Get FASTA)   NCBI Sequence Viewer  
  XP_054172605 (Get FASTA)   NCBI Sequence Viewer  
  XP_054172606 (Get FASTA)   NCBI Sequence Viewer  
  XP_054172607 (Get FASTA)   NCBI Sequence Viewer  
  XP_054172608 (Get FASTA)   NCBI Sequence Viewer  
  XP_054172609 (Get FASTA)   NCBI Sequence Viewer  
  XP_054172610 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH25930 (Get FASTA)   NCBI Sequence Viewer  
  BAA91314 (Get FASTA)   NCBI Sequence Viewer  
  BAA96023 (Get FASTA)   NCBI Sequence Viewer  
  BAB14372 (Get FASTA)   NCBI Sequence Viewer  
  BAB14499 (Get FASTA)   NCBI Sequence Viewer  
  BAG57700 (Get FASTA)   NCBI Sequence Viewer  
  CAD38971 (Get FASTA)   NCBI Sequence Viewer  
  EAW89661 (Get FASTA)   NCBI Sequence Viewer  
  EAW89662 (Get FASTA)   NCBI Sequence Viewer  
  EAW89663 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSP00000331487
  ENSP00000331487.5
  ENSP00000363879
  ENSP00000363879.5
  ENSP00000458384.1
  ENSP00000459457.1
  ENSP00000459462.1
  ENSP00000460465.1
  ENSP00000461478.1
  ENSP00000461543.1
  ENSP00000465247.1
  ENSP00000467400.1
  ENSP00000486640.1
  ENSP00000516165.1
GenBank Protein Q8TAT6 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_060391   ⟸   NM_017921
- Peptide Label: isoform 1
- UniProtKB: Q9NWR5 (UniProtKB/Swiss-Prot),   Q9H964 (UniProtKB/Swiss-Prot),   Q9H8V2 (UniProtKB/Swiss-Prot),   Q8N3J1 (UniProtKB/Swiss-Prot),   Q9P229 (UniProtKB/Swiss-Prot),   Q8TAT6 (UniProtKB/Swiss-Prot),   A0A994J7H4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_011523282   ⟸   XM_011524980
- Peptide Label: isoform X2
- UniProtKB: A0A994J7H4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_011523284   ⟸   XM_011524982
- Peptide Label: isoform X4
- UniProtKB: A0A994J7H4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_011523281   ⟸   XM_011524979
- Peptide Label: isoform X1
- UniProtKB: A0A994J7H4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001356627   ⟸   NM_001369698
- Peptide Label: isoform 2
- UniProtKB: A0A994J7H4 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSP00000331487   ⟸   ENST00000331134
Ensembl Acc Id: ENSP00000461478   ⟸   ENST00000570324
Ensembl Acc Id: ENSP00000363879   ⟸   ENST00000374747
Ensembl Acc Id: ENSP00000486640   ⟸   ENST00000625705
Ensembl Acc Id: ENSP00000460465   ⟸   ENST00000571714
Ensembl Acc Id: ENSP00000458384   ⟸   ENST00000572824
Ensembl Acc Id: ENSP00000467400   ⟸   ENST00000572760
Ensembl Acc Id: ENSP00000465247   ⟸   ENST00000573876
Ensembl Acc Id: ENSP00000459457   ⟸   ENST00000573519
Ensembl Acc Id: ENSP00000459462   ⟸   ENST00000573212
Ensembl Acc Id: ENSP00000461543   ⟸   ENST00000574897
RefSeq Acc Id: XP_047292321   ⟸   XM_047436365
- Peptide Label: isoform X3
- UniProtKB: A0A994J7H4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_047292324   ⟸   XM_047436368
- Peptide Label: isoform X7
RefSeq Acc Id: XP_047292322   ⟸   XM_047436366
- Peptide Label: isoform X5
- UniProtKB: A0A994J7H4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_047292323   ⟸   XM_047436367
- Peptide Label: isoform X6
Ensembl Acc Id: ENSP00000516165   ⟸   ENST00000705719
RefSeq Acc Id: XP_054172605   ⟸   XM_054316630
- Peptide Label: isoform X3
- UniProtKB: A0A994J7H4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_054172604   ⟸   XM_054316629
- Peptide Label: isoform X2
- UniProtKB: A0A994J7H4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_054172610   ⟸   XM_054316635
- Peptide Label: isoform X7
RefSeq Acc Id: XP_054172606   ⟸   XM_054316631
- Peptide Label: isoform X8
- UniProtKB: A0A994J7H4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_054172607   ⟸   XM_054316632
- Peptide Label: isoform X4
- UniProtKB: A0A994J7H4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_054172608   ⟸   XM_054316633
- Peptide Label: isoform X5
- UniProtKB: A0A994J7H4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_054172603   ⟸   XM_054316628
- Peptide Label: isoform X1
- UniProtKB: A0A994J7H4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_054172609   ⟸   XM_054316634
- Peptide Label: isoform X6
Protein Domains
MPN   NPL4 zinc-binding putative   Nuclear pore localisation protein NPL4 C-terminal   Nuclear pore localisation protein Npl4 ubiquitin-   RanBP2-type

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q8TAT6-F1-model_v2 AlphaFold Q8TAT6 1-608 view protein structure

Promoters
RGD ID:6794268
Promoter ID:HG_KWN:27363
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Lymphoblastoid
Transcripts:UC002KAR.1
Position:
Human AssemblyChrPosition (strand)Source
Build 361777,138,201 - 77,138,701 (-)MPROMDB
RGD ID:6794705
Promoter ID:HG_KWN:27367
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:CD4+TCell,   CD4+TCell_12Hour,   CD4+TCell_2Hour,   HeLa_S3,   K562,   Lymphoblastoid,   NB4
Transcripts:NM_017921,   UC002KAU.2,   UC002KAV.1
Position:
Human AssemblyChrPosition (strand)Source
Build 361777,214,006 - 77,214,612 (+)MPROMDB
RGD ID:7236617
Promoter ID:EPDNEW_H24053
Type:initiation region
Name:NPLOC4_2
Description:NPL4 homolog, ubiquitin recognition factor
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H24054  
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh381781,566,598 - 81,566,658EPDNEW
RGD ID:7236615
Promoter ID:EPDNEW_H24054
Type:initiation region
Name:NPLOC4_1
Description:NPL4 homolog, ubiquitin recognition factor
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H24053  
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh381781,637,112 - 81,637,172EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene HGNC:18261 AgrOrtholog
COSMIC NPLOC4 COSMIC
Ensembl Genes ENSG00000182446 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENST00000331134 ENTREZGENE
  ENST00000331134.11 UniProtKB/Swiss-Prot
  ENST00000374747 ENTREZGENE
  ENST00000374747.9 UniProtKB/Swiss-Prot
  ENST00000570324.1 UniProtKB/TrEMBL
  ENST00000571714.5 UniProtKB/TrEMBL
  ENST00000572760.5 UniProtKB/TrEMBL
  ENST00000572824.1 UniProtKB/TrEMBL
  ENST00000573212.5 UniProtKB/TrEMBL
  ENST00000573519.5 UniProtKB/TrEMBL
  ENST00000573876.1 UniProtKB/TrEMBL
  ENST00000574897.5 UniProtKB/TrEMBL
  ENST00000625705.1 UniProtKB/TrEMBL
  ENST00000705719.1 UniProtKB/TrEMBL
Gene3D-CATH Cytidine Deaminase, domain 2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Zn-finger domain of Sec23/24 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
GTEx ENSG00000182446 GTEx
HGNC ID HGNC:18261 ENTREZGENE
Human Proteome Map NPLOC4 Human Proteome Map
InterPro MPN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Npl4 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  NPL4_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Npl4_Ub-like_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  NPL4_Zn-bd_put UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ubiquitin-like_domsf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_RanBP2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_RanBP2_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report hsa:55666 UniProtKB/Swiss-Prot
NCBI Gene 55666 ENTREZGENE
OMIM 606590 OMIM
PANTHER HIGH MOBILITY GROUP AT-HOOK 2 UniProtKB/TrEMBL
  NUCLEAR PROTEIN LOCALIZATION PROTEIN 4 HOMOLOG UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PROTEIN GVQW1-RELATED UniProtKB/TrEMBL
  PTHR12710 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam NPL4 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  UN_NPL4 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  zf-NPL4 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PharmGKB PA143485558 PharmGKB
PIRSF Polyub_prc_Npl4 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE MPN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZF_RANBP2_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZF_RANBP2_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART ZnF_RBZ UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF54236 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF90209 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A0D9SFI9_HUMAN UniProtKB/TrEMBL
  A0A994J7H4 ENTREZGENE, UniProtKB/TrEMBL
  I3L0W3_HUMAN UniProtKB/TrEMBL
  I3L281_HUMAN UniProtKB/TrEMBL
  I3L283_HUMAN UniProtKB/TrEMBL
  I3L3I1_HUMAN UniProtKB/TrEMBL
  I3L4S2_HUMAN UniProtKB/TrEMBL
  I3L4U9_HUMAN UniProtKB/TrEMBL
  K7EJN1_HUMAN UniProtKB/TrEMBL
  NPL4_HUMAN UniProtKB/Swiss-Prot
  Q8N3J1 ENTREZGENE
  Q8TAT6 ENTREZGENE
  Q9H8V2 ENTREZGENE
  Q9H964 ENTREZGENE
  Q9NWR5 ENTREZGENE
  Q9P229 ENTREZGENE
UniProt Secondary Q8N3J1 UniProtKB/Swiss-Prot
  Q9H8V2 UniProtKB/Swiss-Prot
  Q9H964 UniProtKB/Swiss-Prot
  Q9NWR5 UniProtKB/Swiss-Prot
  Q9P229 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-07-07 NPLOC4  NPL4 homolog, ubiquitin recognition factor    nuclear protein localization 4 homolog (S. cerevisiae)  Symbol and/or name change 5135510 APPROVED