GWAS749730_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS749730_H (mathematical ability QTL GWAS749730 (human)) Homo sapiens

Symbol: GWAS749730_H
Name: mathematical ability QTL GWAS749730 (human)
RGD ID: 407100754
Trait: mathematical ability
LOD Score: Not Available
P Value: 1.0E-8
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh381535,648,042 - 35,648,043RGD_MAPPER_PIPELINEGRCh38
GRCh371535,940,243 - 35,940,244RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS749730_HHumanmathematical ability  IAGPrs35000814405850206 GWAS_CATALOGPMID:30038396
References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
6770716DPH6-DTDPH6 divergent transcript153554619535859001Human

Position Markers

Peak: (rs35000814)
Human AssemblyChrPosition (strand)Source
GRCh381535,648,042 - 35,648,043RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2289410BW327_HBody weight QTL 327 (human)3.320.0001Body fat amount151998012945980129Human
1643273BW330_HBody Weight QTL 330 (human)1.050.014Body weightbody mass index152686671952866719Human
407100754GWAS749730_Hmathematical ability QTL GWAS749730 (human)1e-08mathematical ability153564804235648043Human
2289430BMD7_HBone mineral density QTL 7 (human)3.320.0001Bone mineral density151998012945980129Human
1559411SCL107_HSerum cholesterol level QTL 107 (human)3.88Lipid leveltriglyceride152654355252543552Human
2299958PRSTS330_HProstate tumor susceptibility QTL 330 (human)1.020.0151Prostate tumor susceptibility153479023060790230Human
1643523BW284_HBody Weight QTL 284 (human)1.950.0013Body weight152179288947792889Human
1559354LDLPS4_HLow density lipoprotein particle size QTL 4 (human)2.20.019LDL particle size153479023060790230Human
407103518GWAS752494_Hmathematical ability QTL GWAS752494 (human)5e-10mathematical ability153564804235648043Human
2289420BW314_HBody weight QTL 314 (human)2.720.0003Body weightlean mass151998012945980129Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS749730_H GCST006569 Self-reported math ability (MTAG) 670,471 European ancestry individuals A 0.8581 1E-8 8 rs35000814 0.0146 mathematical ability (EFO:0004875)
 PMID:30038396
GWAS752494_H GCST006574 Highest math class taken 430,445 European ancestry individuals A 0.8579 5E-10 9.302 rs35000814 0.0202 mathematical ability (EFO:0004875)
 PMID:30038396
None Available GCST90435413 Body mass index 403,610 European ancestry individuals ? NR 3E-8 7.523 rs35000814 0.0161161 body mass index (EFO:0004340)
 PMID:39134668
Database Acc Id Source(s)
GWAS Catalog GCST006569 GWAS Catalog

RGD Curation Notes
Note Type Note Reference