GWAS745440_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS745440_H (cholesteryl esters to total lipids in large VLDL percentage QTL GWAS745440 (human)) Homo sapiens

Symbol: GWAS745440_H
Name: cholesteryl esters to total lipids in large VLDL percentage QTL GWAS745440 (human)
RGD ID: 407096464
Trait: cholesteryl esters to total lipids in large VLDL percentage
LOD Score: Not Available
P Value: 3.0E-12
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh381558,310,101 - 58,310,102RGD_MAPPER_PIPELINEGRCh38
GRCh371558,602,300 - 58,602,301RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS745440_HHumancholesteryl esters to total lipids in large VLDL percentage  IAGPrs261265405850206 GWAS_CATALOGPMID:36764567
References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Position Markers

Peak: (rs261265)
Human AssemblyChrPosition (strand)Source
GRCh381558,310,101 - 58,310,102RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
407096464GWAS745440_Hcholesteryl esters to total lipids in large VLDL percentage QTL GWAS745440 (human)3e-12cholesteryl esters to total lipids in large VLDL percentage 155831010158310102Human
2299958PRSTS330_HProstate tumor susceptibility QTL 330 (human)1.020.0151Prostate tumor susceptibility153479023060790230Human
407023529GWAS672505_Hfree cholesterol to total lipids in very large VLDL percentage QTL GWAS672505 (human)2e-11free cholesterol to total lipids in very large VLDL percentage 155831010158310102Human
1559354LDLPS4_HLow density lipoprotein particle size QTL 4 (human)2.20.019LDL particle size153479023060790230Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS672505_H GCST90269684 Free cholesterol to total lipids in very large VLDL percentage (UKB data field 23587) 87,620 European ancestry individuals A 0.453418 2E-11 10.699 rs261265 0.0309335 free cholesterol to total lipids in very large VLDL percentage (EFO:0022289)
 PMID:36764567
None Available GCST90269687 Cholesterol to total lipids in large VLDL percentage (UKB data field 23590) 88,321 European ancestry individuals A 0.453403 2E-11 10.699 rs261265 0.0312334 cholesterol to total lipids in large VLDL percentage (EFO:0022236)
 PMID:36764567
GWAS745440_H GCST90269688 Cholesteryl esters to total lipids in large VLDL percentage (UKB data field 23591) 88,321 European ancestry individuals A 0.453403 3E-12 11.523 rs261265 0.0317981 cholesteryl esters to total lipids in large VLDL percentage (EFO:0022250)
 PMID:36764567
Database Acc Id Source(s)
GWAS Catalog GCST90269688 GWAS Catalog

RGD Curation Notes
Note Type Note Reference