GWAS744538_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS744538_H (X-12707 measurement QTL GWAS744538 (human)) Homo sapiens

Symbol: GWAS744538_H
Name: X-12707 measurement QTL GWAS744538 (human)
RGD ID: 407095562
Trait: X-12707 measurement
LOD Score: Not Available
P Value: 4.0E-59
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh381628,608,999 - 28,609,000RGD_MAPPER_PIPELINEGRCh38
GRCh371628,620,320 - 28,620,321RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS744538_HHumanX-12707 measurement  IAGPrs4149383405850206 GWAS_CATALOGPMID:36357675
References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
735435SULT1A1sulfotransferase family 1A member 1162860525828623375Human

Position Markers

Peak: (rs4149383)
Human AssemblyChrPosition (strand)Source
GRCh381628,608,999 - 28,609,000RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
407094176GWAS743152_HX-13553 measurement QTL GWAS743152 (human)6e-12X-13553 measurement162860899928609000Human
406895321GWAS544297_Hhydroquinone sulfate measurement QTL GWAS544297 (human)9e-14hydroquinone sulfate measurement162860899928609000Human
407095562GWAS744538_HX-12707 measurement QTL GWAS744538 (human)4e-59X-12707 measurement162860899928609000Human
407408818GWAS1057794_Hascorbic acid 3-sulfate measurement QTL GWAS1057794 (human)7e-43ascorbic acid 3-sulfate measurement162860899928609000Human
407091502GWAS740478_HX-12221 measurement QTL GWAS740478 (human)4e-13X-12221 measurement162860899928609000Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS544297_H GCST90245251 Hydroquinone sulfate levels 14,296 European ancestry individuals A 0.115 9E-14 13.046 rs4149383 0.13957718 hydroquinone sulfate measurement (EFO:0021157)
 PMID:36357675
GWAS740478_H GCST90245534 X-12221 levels 14,296 European ancestry individuals A 0.1166 4E-13 12.398 rs4149383 0.14420791 X-12221 measurement (EFO:0800711)
 PMID:36357675
GWAS743152_H GCST90245580 X-13553 levels 14,296 European ancestry individuals A 0.1157 6E-12 11.222 rs4149383 0.13613515 X-13553 measurement (EFO:0021355)
 PMID:36357675
GWAS744538_H GCST90245556 X-12707 levels 14,296 European ancestry individuals A 0.1159 4E-59 58.398 rs4149383 0.31314132 X-12707 measurement (EFO:0800720)
 PMID:36357675
GWAS1057794_H GCST90139660 Ascorbic acid 3-sulfate levels 6,136 Finnish ancestry individuals A NR 7E-43 42.155 rs4149383 0.46 ascorbic acid 3-sulfate measurement (EFO:0800173)
 PMID:35347128
Database Acc Id Source(s)
GWAS Catalog GCST90245556 GWAS Catalog

RGD Curation Notes
Note Type Note Reference