GWAS741525_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS741525_H (glomerular filtration rate QTL GWAS741525 (human)) Homo sapiens

Symbol: GWAS741525_H
Name: glomerular filtration rate QTL GWAS741525 (human)
RGD ID: 407092549
Trait: glomerular filtration rate
Measurement Type: glomerular filtration rate   (CMO:0000490)    
LOD Score: Not Available
P Value: 3.0E-36
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh381553,623,569 - 53,623,570RGD_MAPPER_PIPELINEGRCh38
GRCh371553,915,766 - 53,915,767RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Data Annotations    Click to see Annotation Detail View

Clinical Measurement
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS741525_HHumanglomerular filtration rate  IAGPrs62005941405850206Based on the EFO term IDGWAS_CATALOGPMID:30604766

Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS741525_HHumanglomerular filtration rate  IAGPrs62005941405850206 GWAS_CATALOGPMID:30604766
Experimental Data Annotations     Click to see Annotation Detail View

Clinical Measurement

References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
1602418WDR72WD repeat domain 72155351374153762878Human

Position Markers

Peak: (rs62005941)
Human AssemblyChrPosition (strand)Source
GRCh381553,623,569 - 53,623,570RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2299958PRSTS330_HProstate tumor susceptibility QTL 330 (human)1.020.0151Prostate tumor susceptibility153479023060790230Human
407092549GWAS741525_Hglomerular filtration rate QTL GWAS741525 (human)3e-36glomerular filtration rateglomerular filtration rate (CMO:0000490)155362356953623570Human
407270188GWAS919164_Hblood urea nitrogen measurement QTL GWAS919164 (human)3e-31blood urea nitrogen measurementblood urea nitrogen level (CMO:0000049)155362356953623570Human
1559354LDLPS4_HLow density lipoprotein particle size QTL 4 (human)2.20.019LDL particle size153479023060790230Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS741525_H GCST007344 Estimated glomerular filtration rate 134,070 European ancestry individuals, 143,658 East Asian ancestry individuals, 26,344 Hispanic or Latino ancestry individuals, 8,224 African American individuals ? NR 3E-36 35.523 rs62005941 N/A glomerular filtration rate (EFO:0005208)
 PMID:30604766
GWAS919164_H GCST90018728 Blood urea nitrogen levels 148,767 East Asian ancestry individuals G 0.390922 3E-31 30.523 rs62005941 0.0399635 blood urea nitrogen measurement (EFO:0004741)
 PMID:34594039
Database Acc Id Source(s)
GWAS Catalog GCST007344 GWAS Catalog

RGD Curation Notes
Note Type Note Reference