GWAS740006_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS740006_H (serum IgG glycosylation measurement QTL GWAS740006 (human)) Homo sapiens

Symbol: GWAS740006_H
Name: serum IgG glycosylation measurement QTL GWAS740006 (human)
RGD ID: 407091030
Trait: serum IgG glycosylation measurement
LOD Score: Not Available
P Value: 8.0E-14
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh38933,134,619 - 33,134,620RGD_MAPPER_PIPELINEGRCh38
GRCh37933,134,617 - 33,134,618RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS740006_HHumanserum IgG glycosylation measurement  IAGPrs3824459405850206 GWAS_CATALOGPMID:29535710
References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
1349315B4GALT1beta-1,4-galactosyltransferase 193310407733185089Human

Position Markers

Peak: (rs3824459)
Human AssemblyChrPosition (strand)Source
GRCh38933,134,619 - 33,134,620RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
407076592GWAS725568_Hserum IgG glycosylation measurement QTL GWAS725568 (human)3e-08serum IgG glycosylation measurement93313461933134620Human
407091591GWAS740567_Hserum IgG glycosylation measurement QTL GWAS740567 (human)0.0000004serum IgG glycosylation measurement93313461933134620Human
407091030GWAS740006_Hserum IgG glycosylation measurement QTL GWAS740006 (human)8e-14serum IgG glycosylation measurement93313461933134620Human
407074501GWAS723477_Hserum IgG glycosylation measurement QTL GWAS723477 (human)5e-14serum IgG glycosylation measurement93313461933134620Human
407087321GWAS736297_Hserum IgG glycosylation measurement QTL GWAS736297 (human)4e-14serum IgG glycosylation measurement93313461933134620Human
407076590GWAS725566_Hserum IgG glycosylation measurement QTL GWAS725566 (human)0.0000003serum IgG glycosylation measurement93313461933134620Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS723477_H GCST005656 IgG glycosylation patterns 1,823 European ancestry individuals T 0.0205 5E-14 13.302 rs3824459 0.924 serum IgG glycosylation measurement (EFO:0005193)
 PMID:29535710
GWAS725566_H GCST005656 IgG glycosylation patterns 1,823 European ancestry individuals T 0.0204 3E-7 6.523 rs3824459 0.6286 serum IgG glycosylation measurement (EFO:0005193)
 PMID:29535710
GWAS725568_H GCST005656 IgG glycosylation patterns 1,823 European ancestry individuals T 0.0204 3E-8 7.523 rs3824459 0.6793 serum IgG glycosylation measurement (EFO:0005193)
 PMID:29535710
GWAS736297_H GCST005656 IgG glycosylation patterns 1,823 European ancestry individuals T 0.0204 4E-14 13.398 rs3824459 0.9243 serum IgG glycosylation measurement (EFO:0005193)
 PMID:29535710
None Available GCST005656 IgG glycosylation patterns 1,823 European ancestry individuals T 0.0204 3E-8 7.523 rs3824459 0.6865 serum IgG glycosylation measurement (EFO:0005193)
 PMID:29535710
None Available GCST005656 IgG glycosylation patterns 1,823 European ancestry individuals T 0.0204 3E-8 7.523 rs3824459 0.6786 serum IgG glycosylation measurement (EFO:0005193)
 PMID:29535710
GWAS740006_H GCST005656 IgG glycosylation patterns 1,823 European ancestry individuals T 0.0204 8E-14 13.097 rs3824459 0.9179 serum IgG glycosylation measurement (EFO:0005193)
 PMID:29535710
GWAS740567_H GCST005656 IgG glycosylation patterns 1,823 European ancestry individuals T 0.0204 4E-7 6.398 rs3824459 0.6225 serum IgG glycosylation measurement (EFO:0005193)
 PMID:29535710
Database Acc Id Source(s)
GWAS Catalog GCST005656 GWAS Catalog

RGD Curation Notes
Note Type Note Reference