GWAS737854_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS737854_H (coronary artery disease QTL GWAS737854 (human)) Homo sapiens

Symbol: GWAS737854_H
Name: coronary artery disease QTL GWAS737854 (human)
RGD ID: 407088878
Trait: coronary artery disease
LOD Score: Not Available
P Value: 8.0E-11
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh38819,943,018 - 19,943,019RGD_MAPPER_PIPELINEGRCh38
GRCh37819,800,529 - 19,800,530RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Disease Annotations     Click to see Annotation Detail View

Phenotype Annotations     Click to see Annotation Detail View

Human Phenotype
References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
70836LPLlipoprotein lipase81993925319967259Human

Position Markers

Peak: (rs6997330)
Human AssemblyChrPosition (strand)Source
GRCh38819,943,018 - 19,943,019RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1298482BP2_HBlood pressure QTL 2 (human)1.8Blood pressurediastolic8695325632953256Human
1558703SCL6_HSerum cholesterol level QTL 1 (human)1.2Lipid levelHDL cholesterol81246863538468635Human
407088878GWAS737854_Hcoronary artery disease QTL GWAS737854 (human)8e-11coronary artery disease81994301819943019Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS737854_H GCST005196 Coronary artery disease 88,192 cases, 162,544 controls C 0.044 8E-11 10.097 rs6997330 0.1291 coronary artery disease (EFO:0001645)
 PMID:29212778
Database Acc Id Source(s)
GWAS Catalog GCST005196 GWAS Catalog

RGD Curation Notes
Note Type Note Reference