GWAS737142_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS737142_H (reticulocyte count QTL GWAS737142 (human)) Homo sapiens

Symbol: GWAS737142_H
Name: reticulocyte count QTL GWAS737142 (human)
RGD ID: 407088166
Trait: reticulocyte count
Measurement Type: total reticulocyte count   (CMO:0003020)    
LOD Score: Not Available
P Value: 9E-86
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh38552,800,109 - 52,800,110RGD_MAPPER_PIPELINEGRCh38
GRCh37552,095,943 - 52,095,944RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Data Annotations    Click to see Annotation Detail View

Clinical Measurement
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS737142_HHumantotal reticulocyte count  IAGPrs114309882405850206Based on the EFO term IDGWAS_CATALOGPMID:32888494

Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS737142_HHumanreticulocyte count  IAGPrs114309882405850206 GWAS_CATALOGPMID:32888494
Experimental Data Annotations     Click to see Annotation Detail View

Clinical Measurement

References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
153002614PELO-AS1PELO antisense RNA 155267342752800813Human
1343336PELOpelota mRNA surveillance and ribosome rescue factor55278791652804044Human
69006ITGA1integrin subunit alpha 155278791652959209Human
155654526LOC127402876NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:52095759-5209645755279992552800623Human

Position Markers

Peak: (rs114309882)
Human AssemblyChrPosition (strand)Source
GRCh38552,800,109 - 52,800,110RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
407381736GWAS1030712_Hreticulocyte count QTL GWAS1030712 (human)3e-122reticulocyte counttotal reticulocyte count (CMO:0003020)55280010952800110Human
407088166GWAS737142_Hreticulocyte count QTL GWAS737142 (human)9e-86reticulocyte counttotal reticulocyte count (CMO:0003020)55280010952800110Human
407382688GWAS1031664_Hreticulocyte measurement QTL GWAS1031664 (human)1e-122reticulocyte morphology trait (VT:0002424)red blood cell measurement (CMO:0001356)55280010952800110Human
407054778GWAS703754_Hreticulocyte measurement QTL GWAS703754 (human)3e-91reticulocyte morphology trait (VT:0002424)red blood cell measurement (CMO:0001356)55280010952800110Human
407221273GWAS870249_Hreticulocyte measurement QTL GWAS870249 (human)2e-87reticulocyte morphology trait (VT:0002424)red blood cell measurement (CMO:0001356)55280010952800110Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS703754_H GCST90002387 Immature fraction of reticulocytes 408,112 British individuals A 0.02241 3E-91 90.523 rs114309882 0.15323345 reticulocyte measurement (EFO:0010700)
 PMID:32888494
GWAS737142_H GCST90002405 Reticulocyte count 408,112 British individuals A 0.022403 9E-86 85.046 rs114309882 0.14809717 reticulocyte count (EFO:0007986)
 PMID:32888494
GWAS870249_H GCST90002406 Reticulocyte fraction of red cells 408,112 British individuals A 0.022405 2E-87 86.699 rs114309882 0.14937678 reticulocyte measurement (EFO:0010700)
 PMID:32888494
GWAS1030712_H GCST90002385 High light scatter reticulocyte count 408,112 British individuals A 0.022435 3E-122 121.523 rs114309882 0.17626561 reticulocyte count (EFO:0007986)
 PMID:32888494
GWAS1031664_H GCST90002386 High light scatter reticulocyte percentage of red cells 408,112 British individuals A 0.022435 1E-122 122 rs114309882 0.17653441 reticulocyte measurement (EFO:0010700)
 PMID:32888494
Database Acc Id Source(s)
GWAS Catalog GCST90002405 GWAS Catalog

RGD Curation Notes
Note Type Note Reference