GWAS736988_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS736988_H (basophil count QTL GWAS736988 (human)) Homo sapiens

Symbol: GWAS736988_H
Name: basophil count QTL GWAS736988 (human)
RGD ID: 407088012
Trait: basophil quantity   (VT:0002607)    
Measurement Type: blood basophil count   (CMO:0000034)    
LOD Score: Not Available
P Value: 6.0E-13
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh381550,100,624 - 50,100,625RGD_MAPPER_PIPELINEGRCh38
GRCh371550,392,821 - 50,392,822RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Data Annotations    Click to see Annotation Detail View

Clinical Measurement
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS736988_HHumanblood basophil count  IAGPrs11857230405850206Based on the EFO term IDGWAS_CATALOGPMID:29403010

Vertebrate Trait
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS736988_HHumanbasophil quantity  IAGPrs11857230405850206Based on the EFO term IDGWAS_CATALOGPMID:29403010

Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS736988_HHumanbasophil count  IAGPrs11857230405850206 GWAS_CATALOGPMID:29403010
Experimental Data Annotations     Click to see Annotation Detail View

Clinical Measurement

Vertebrate Trait

References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
1315485ATP8B4ATPase phospholipid transporting 8B4 (putative)154985823850181854Human

Position Markers

Peak: (rs11857230)
Human AssemblyChrPosition (strand)Source
GRCh381550,100,624 - 50,100,625RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1643273BW330_HBody Weight QTL 330 (human)1.050.014Body weightbody mass index152686671952866719Human
1559411SCL107_HSerum cholesterol level QTL 107 (human)3.88Lipid leveltriglyceride152654355252543552Human
2299958PRSTS330_HProstate tumor susceptibility QTL 330 (human)1.020.0151Prostate tumor susceptibility153479023060790230Human
1559354LDLPS4_HLow density lipoprotein particle size QTL 4 (human)2.20.019LDL particle size153479023060790230Human
407088012GWAS736988_Hbasophil count QTL GWAS736988 (human)6e-13basophil quantity (VT:0002607)blood basophil count (CMO:0000034)155010062450100625Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS736988_H GCST005976 White blood cell count (basophil) 62,076 Japanese ancestry individuals ? NR 6E-13 12.222 rs11857230 0.04403 basophil count (EFO:0005090)
 PMID:29403010
Database Acc Id Source(s)
GWAS Catalog GCST005976 GWAS Catalog

RGD Curation Notes
Note Type Note Reference