GWAS733773_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS733773_H (sex hormone-binding globulin measurement QTL GWAS733773 (human)) Homo sapiens

Symbol: GWAS733773_H
Name: sex hormone-binding globulin measurement QTL GWAS733773 (human)
RGD ID: 407084797
Trait: sex hormone-binding globulin measurement
LOD Score: Not Available
P Value: 9.0E-17
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh381553,453,972 - 53,453,973RGD_MAPPER_PIPELINEGRCh38
GRCh371553,746,169 - 53,746,170RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS733773_HHumansex hormone-binding globulin measurement  IAGPrs8030357405850206 GWAS_CATALOGPMID:32042192
References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
38612523LOC105370826uncharacterized LOC105370826155344579553552999Human

Position Markers

Peak: (rs8030357)
Human AssemblyChrPosition (strand)Source
GRCh381553,453,972 - 53,453,973RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
407082967GWAS731943_Hsex hormone-binding globulin measurement QTL GWAS731943 (human)2e-15sex hormone-binding globulin measurement155345397253453973Human
2299958PRSTS330_HProstate tumor susceptibility QTL 330 (human)1.020.0151Prostate tumor susceptibility153479023060790230Human
1559354LDLPS4_HLow density lipoprotein particle size QTL 4 (human)2.20.019LDL particle size153479023060790230Human
407084797GWAS733773_Hsex hormone-binding globulin measurement QTL GWAS733773 (human)9e-17sex hormone-binding globulin measurement155345397253453973Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS731943_H GCST90012109 Sex hormone-binding globulin levels 180,726 European ancestry men G 0.284617 2E-15 14.699 rs8030357 0.0103058 sex hormone-binding globulin measurement (EFO:0004696)
 PMID:32042192
GWAS733773_H GCST90012108 Sex hormone-binding globulin levels adjusted for BMI 180,094 European ancestry men G 0.284617 9E-17 16.046 rs8030357 0.0102554 sex hormone-binding globulin measurement (EFO:0004696)
 PMID:32042192
Database Acc Id Source(s)
GWAS Catalog GCST90012108 GWAS Catalog

RGD Curation Notes
Note Type Note Reference