GWAS733545_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS733545_H (N6-acetyllysine measurement QTL GWAS733545 (human)) Homo sapiens

Symbol: GWAS733545_H
Name: N6-acetyllysine measurement QTL GWAS733545 (human)
RGD ID: 407084569
Trait: N6-acetyllysine measurement
LOD Score: Not Available
P Value: 4E-107
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh38177,626,584 - 7,626,585RGD_MAPPER_PIPELINEGRCh38
GRCh37177,529,902 - 7,529,903RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS733545_HHumanN6-acetyllysine measurement  IAGPrs13894405850206 GWAS_CATALOGPMID:36635386
References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
736172SHBGsex hormone binding globulin1776140647633372Human
1317312SAT2spermidine/spermine N1-acetyltransferase family member 21776262347627876Human

Position Markers

Peak: (rs13894)
Human AssemblyChrPosition (strand)Source
GRCh38177,626,584 - 7,626,585RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
407021986GWAS670962_Hdiamine acetyltransferase 2 measurement QTL GWAS670962 (human)9e-253diamine acetyltransferase 2 measurement1776265847626585Human
407200005GWAS848981_HN6-acetyllysine measurement QTL GWAS848981 (human)2e-46N6-acetyllysine measurement1776265847626585Human
406920368GWAS569344_HN6-acetyllysine measurement QTL GWAS569344 (human)2e-84N6-acetyllysine measurement1776265847626585Human
407200001GWAS848977_Hmetabolite measurement QTL GWAS848977 (human)7e-33metabolite measurement1776265847626585Human
407215859GWAS864835_Hserum metabolite measurement QTL GWAS864835 (human)1e-38serum metabolite measurement1776265847626585Human
407177916GWAS826892_HN6-acetyllysine measurement QTL GWAS826892 (human)4e-43N6-acetyllysine measurement1776265847626585Human
407220620GWAS869596_HN6-acetyllysine measurement QTL GWAS869596 (human)5e-80N6-acetyllysine measurement1776265847626585Human
407084569GWAS733545_HN6-acetyllysine measurement QTL GWAS733545 (human)4e-107N6-acetyllysine measurement1776265847626585Human
407242250GWAS891226_HN6-acetyllysine measurement QTL GWAS891226 (human)6e-80N6-acetyllysine measurement1776265847626585Human
407220426GWAS869402_HN6-acetyllysine measurement QTL GWAS869402 (human)9e-176N6-acetyllysine measurement1776265847626585Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS569344_H GCST90103071 N6-acetyllysine levels 8,809 European ancestry individuals A NR 2E-84 83.699 rs13894 0.574 N6-acetyllysine measurement (EFO:0800036)
 PMID:35050183
GWAS670962_H GCST90247237 Diamine acetyltransferase 2 levels 10,708 European ancestry individuals A 0.07 9E-253 252.046 rs13894 0.835 diamine acetyltransferase 2 measurement (EFO:0802465)
 PMID:34648354
GWAS733545_H GCST90199826 N6-acetyllysine levels 8,242 European ancestry individuals A 0.073424 4E-107 106.398 rs13894 0.619273 N6-acetyllysine measurement (EFO:0800036)
 PMID:36635386
GWAS826892_H GCST90176304 N6-acetyllysine levels 2,466 Black/admixed ancestry individuals A NR 4E-43 42.398 rs13894 0.761873 N6-acetyllysine measurement (EFO:0800036)
 PMID:35995766
GWAS848977_H GCST90265695 Urine N2,N6-diacetyllysine levels in chronic kidney disease 4,907 European ancestry individuals A 0.07 7E-33 32.155 rs13894 0.366 metabolite measurement (EFO:0004725)
 PMID:37277652
GWAS848981_H GCST90265700 Plasma N6-acetyllysine levels in chronic kidney disease 4,960 European ancestry individuals A 0.07 2E-46 45.699 rs13894 0.182 N6-acetyllysine measurement (EFO:0800036)
 PMID:37277652
GWAS864835_H GCST012020 Serum metabolite levels 3,926 Hispanic/Latino individuals G 0.942944 1E-38 38 rs13894 0.617 serum metabolite measurement (EFO:0005653)
 PMID:33031748
GWAS869402_H GCST90245307 N6-acetyllysine levels 14,296 European ancestry individuals A 0.074 9E-176 175.046 rs13894 0.5365867 N6-acetyllysine measurement (EFO:0800036)
 PMID:36357675
GWAS869596_H GCST90139448 N6-acetyllysine levels 6,136 Finnish ancestry individuals A NR 5E-80 79.302 rs13894 0.75 N6-acetyllysine measurement (EFO:0800036)
 PMID:35347128
GWAS891226_H GCST90299717 Metabolite levels (N6-acetyllysine) 10,272 European, Hispanic or African American individuals A 0.0676 6E-80 79.222 rs13894 0.525 N6-acetyllysine measurement (EFO:0800036)
 PMID:37253714
Database Acc Id Source(s)
GWAS Catalog GCST90199826 GWAS Catalog

RGD Curation Notes
Note Type Note Reference