GWAS731504_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS731504_H (cholesterol to total lipids in medium LDL percentage QTL GWAS731504 (human)) Homo sapiens

Symbol: GWAS731504_H
Name: cholesterol to total lipids in medium LDL percentage QTL GWAS731504 (human)
RGD ID: 407082528
Trait: cholesterol to total lipids in medium LDL percentage
LOD Score: Not Available
P Value: 4.0E-14
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh381543,331,199 - 43,331,200RGD_MAPPER_PIPELINEGRCh38
GRCh371543,623,397 - 43,623,398RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS731504_HHumancholesterol to total lipids in medium LDL percentage  IAGPrs45617141405850206 GWAS_CATALOGPMID:36764567
References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
1605272MAPDAN6-Methyl-AMP deaminase154333035143354569Human
155778720LOC127829416H3K27ac hESC enhancer GRCh37_chr15:43622679-43623629154333048143331431Human

Position Markers

Peak: (rs45617141)
Human AssemblyChrPosition (strand)Source
GRCh381543,331,199 - 43,331,200RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2289410BW327_HBody weight QTL 327 (human)3.320.0001Body fat amount151998012945980129Human
1643273BW330_HBody Weight QTL 330 (human)1.050.014Body weightbody mass index152686671952866719Human
407025683GWAS674659_Hphospholipids:total lipids ratio QTL GWAS674659 (human)1e-14phospholipids:total lipids ratio154333119943331200Human
407082528GWAS731504_Hcholesterol to total lipids in medium LDL percentage QTL GWAS731504 (human)4e-14cholesterol to total lipids in medium LDL percentage 154333119943331200Human
2289430BMD7_HBone mineral density QTL 7 (human)3.320.0001Bone mineral density151998012945980129Human
1559411SCL107_HSerum cholesterol level QTL 107 (human)3.88Lipid leveltriglyceride152654355252543552Human
2299958PRSTS330_HProstate tumor susceptibility QTL 330 (human)1.020.0151Prostate tumor susceptibility153479023060790230Human
1643523BW284_HBody Weight QTL 284 (human)1.950.0013Body weight152179288947792889Human
1559354LDLPS4_HLow density lipoprotein particle size QTL 4 (human)2.20.019LDL particle size153479023060790230Human
2289420BW314_HBody weight QTL 314 (human)2.720.0003Body weightlean mass151998012945980129Human
407062412GWAS711388_Hstem Cell Factor measurement QTL GWAS711388 (human)8e-12stem Cell Factor measurement154333119943331200Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS674659_H GCST90269731 Phospholipids to total lipids in large HDL percentage (UKB data field 23634) 88,329 European ancestry individuals G 0.0161371 1E-14 14 rs45617141 0.149205 phospholipids:total lipids ratio (EFO:0020946)
 PMID:36764567
GWAS711388_H GCST90012023 Stem cell factor levels 21,758 European ancestry individuals T 0.98 8E-12 11.097 rs45617141 0.246 stem Cell Factor measurement (EFO:0008291)
 PMID:33067605
GWAS731504_H GCST90269717 Cholesterol to total lipids in medium LDL percentage (UKB data field 23620) 88,329 European ancestry individuals G 0.0161371 4E-14 13.398 rs45617141 0.150418 cholesterol to total lipids in medium LDL percentage (EFO:0022238)
 PMID:36764567
Database Acc Id Source(s)
GWAS Catalog GCST90269717 GWAS Catalog

RGD Curation Notes
Note Type Note Reference