GWAS731207_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS731207_H (gut microbiome measurement QTL GWAS731207 (human)) Homo sapiens

Symbol: GWAS731207_H
Name: gut microbiome measurement QTL GWAS731207 (human)
RGD ID: 407082231
Trait: gut microbiome measurement
LOD Score: Not Available
P Value: 2.0E-6
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh381549,924,005 - 49,924,006RGD_MAPPER_PIPELINEGRCh38
GRCh371550,216,202 - 50,216,203RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS731207_HHumangut microbiome measurement  IAGPrs10519248405850206 GWAS_CATALOGPMID:31519223
References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
1315485ATP8B4ATPase phospholipid transporting 8B4 (putative)154985823850181854Human

Position Markers

Peak: (rs10519248)
Human AssemblyChrPosition (strand)Source
GRCh381549,924,005 - 49,924,006RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1643273BW330_HBody Weight QTL 330 (human)1.050.014Body weightbody mass index152686671952866719Human
1559411SCL107_HSerum cholesterol level QTL 107 (human)3.88Lipid leveltriglyceride152654355252543552Human
407082231GWAS731207_Hgut microbiome measurement QTL GWAS731207 (human)0.000002gut microbiome measurement154992400549924006Human
2299958PRSTS330_HProstate tumor susceptibility QTL 330 (human)1.020.0151Prostate tumor susceptibility153479023060790230Human
1559354LDLPS4_HLow density lipoprotein particle size QTL 4 (human)2.20.019LDL particle size153479023060790230Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS731207_H GCST008900 Gut microbiota (alpha diversity) 858 Metropolitan French ancestry individuals ? NR 0.000002 5.699 rs10519248 0.867416 gut microbiome measurement (EFO:0007874)
 PMID:31519223
Database Acc Id Source(s)
GWAS Catalog GCST008900 GWAS Catalog

RGD Curation Notes
Note Type Note Reference