GWAS730160_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS730160_H (inflammatory bowel disease QTL GWAS730160 (human)) Homo sapiens

Symbol: GWAS730160_H
Name: inflammatory bowel disease QTL GWAS730160 (human)
RGD ID: 407081184
Trait: inflammatory bowel disease
LOD Score: Not Available
P Value: 9.0E-10
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh38632,981,027 - 32,981,028RGD_MAPPER_PIPELINEGRCh38
GRCh37632,948,804 - 32,948,805RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS730160_HHumaninflammatory bowel disease  IAGPrs1049526405850206Based on the EFO term IDGWAS_CATALOGPMID:28008999

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS730160_HHumanInflammation of the large intestine  IAGPrs1049526405850206Based on the EFO term IDGWAS_CATALOGPMID:28008999
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS730160_HHumaninflammatory bowel disease  IAGPrs1049526405850206 GWAS_CATALOGPMID:28008999

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
1350574BRD2bromodomain containing 263296859432981505Human


Peak: (rs1049526)
Human AssemblyChrPosition (strand)Source
GRCh38632,981,027 - 32,981,028RGD_MAPPER_PIPELINE


1 to 9 of 9 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1358839MULTSCL5_HMultiple sclerosis susceptibility QTL 5 (human)Multiple sclerosis susceptibility61958431145584311Human
407081184GWAS730160_Hinflammatory bowel disease QTL GWAS730160 (human)9e-10inflammatory bowel disease63298102732981028Human
407081172GWAS730148_Hinflammatory bowel disease QTL GWAS730148 (human)5e-11inflammatory bowel disease63298102732981028Human
407080377GWAS729353_HCrohn's disease QTL GWAS729353 (human)0.0000003intestine integrity trait (VT:0010554)63298102732981028Human
407080104GWAS729080_HCrohn's disease QTL GWAS729080 (human)5e-09intestine integrity trait (VT:0010554)63298102732981028Human
1298431RA11_HRheumatoid arthritis QTL 11 (human)0.0000024Joint/bone inflammationrheumatoid arthritis61991188340191709Human
407080367GWAS729343_HCrohn's disease QTL GWAS729343 (human)0.000003intestine integrity trait (VT:0010554)63298102732981028Human
407080383GWAS729359_Hulcerative colitis QTL GWAS729359 (human)2e-08inflammatory bowel disease63298102732981028Human
1358857MULTSCL19_HMultiple sclerosis susceptibility QTL 19 (human)Multiple sclerosis susceptibility61958431145584311Human

1 to 9 of 9 rows


Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS730160_H GCST003958 Inflammatory bowel disease 622 Polish ancestry child cases, 496 Polish ancestry adult cases, 582 Polish ancestry controls ? NR 9E-10 9.046 rs1049526 2.659634 inflammatory bowel disease (EFO:0003767)
 PMID:28008999
GWAS729080_H GCST003959 Crohn's disease 353 Polish ancestry child cases, 237 Polish ancestry adult cases, 582 Polish ancestry controls ? NR 5E-9 8.302 rs1049526 2.4428785 Crohn's disease (EFO:0000384)
 PMID:28008999
GWAS729343_H GCST003959 Crohn's disease 353 Polish ancestry child cases, 237 Polish ancestry adult cases, 582 Polish ancestry controls ? NR 0.000003 5.523 rs1049526 2.530363 Crohn's disease (EFO:0000384)
 PMID:28008999
GWAS729353_H GCST003959 Crohn's disease 353 Polish ancestry child cases, 237 Polish ancestry adult cases, 582 Polish ancestry controls ? NR 3E-7 6.523 rs1049526 2.4273632 Crohn's disease (EFO:0000384)
 PMID:28008999
GWAS729359_H GCST003960 Ulcerative colitis 269 Polish ancestry child cases, 259 Polish ancestry adult cases, 582 Polish ancestry controls ? NR 2E-8 7.699 rs1049526 2.3810558 ulcerative colitis (EFO:0000729)
 PMID:28008999
None Available GCST003960 Ulcerative colitis 269 Polish ancestry child cases, 259 Polish ancestry adult cases, 582 Polish ancestry controls ? NR 3E-7 6.523 rs1049526 2.697503 ulcerative colitis (EFO:0000729)
 PMID:28008999
GWAS730148_H GCST003958 Inflammatory bowel disease 622 Polish ancestry child cases, 496 Polish ancestry adult cases, 582 Polish ancestry controls ? NR 5E-11 10.302 rs1049526 2.434453 inflammatory bowel disease (EFO:0003767)
 PMID:28008999
None Available GCST003958 Inflammatory bowel disease 622 Polish ancestry child cases, 496 Polish ancestry adult cases, 582 Polish ancestry controls ? NR 2E-8 7.699 rs1049526 2.3504539 inflammatory bowel disease (EFO:0003767)
 PMID:28008999
Database
Acc Id
Source(s)
GWAS Catalog GCST003958 GWAS Catalog

Note Type Note Reference