GWAS729215_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS729215_H (sodium measurement QTL GWAS729215 (human)) Homo sapiens

Symbol: GWAS729215_H
Name: sodium measurement QTL GWAS729215 (human)
RGD ID: 407080239
Trait: sodium measurement
Measurement Type: blood sodium level   (CMO:0000499)    
LOD Score: Not Available
P Value: 3.0E-12
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh381131,289,882 - 31,289,883RGD_MAPPER_PIPELINEGRCh38
GRCh371131,311,429 - 31,311,430RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Data Annotations    Click to see Annotation Detail View

Clinical Measurement
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS729215_HHumanblood sodium level  IAGPrs2761589405850206Based on the EFO term IDGWAS_CATALOGPMID:31409800

Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS729215_HHumansodium measurement  IAGPrs2761589405850206 GWAS_CATALOGPMID:31409800
Experimental Data Annotations     Click to see Annotation Detail View

Clinical Measurement

References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
1351849DCDC1doublecortin domain containing 1113086360331369739Human

Position Markers

Peak: (rs2761589)
Human AssemblyChrPosition (strand)Source
GRCh381131,289,882 - 31,289,883RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1576345LVC1_HLeft ventricular contractility QTL 1 (human)3.93Left ventricular contractility11797076733970767Human
1559104SCL15_HSerum cholesterol level QTL 15 (human)2.60.06Lipid levelhyperlipidemia susceptibility111589236841892368Human
407080239GWAS729215_Hsodium measurement QTL GWAS729215 (human)3e-12sodium measurementblood sodium level (CMO:0000499)113128988231289883Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS729215_H GCST008647 Urinary sodium excretion 446,237 European ancestry individuals C 0.370028 3E-12 11.523 rs2761589 0.00897032 sodium measurement (EFO:0009282)
 PMID:31409800
Database Acc Id Source(s)
GWAS Catalog GCST008647 GWAS Catalog

RGD Curation Notes
Note Type Note Reference