GWAS719499_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS719499_H (alcohol consumption measurement QTL GWAS719499 (human)) Homo sapiens

Symbol: GWAS719499_H
Name: alcohol consumption measurement QTL GWAS719499 (human)
RGD ID: 407070523
Trait: alcohol consumption measurement
Measurement Type: ethanol drink intake rate   (CMO:0001407)    
LOD Score: Not Available
P Value: 5.0E-8
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh381556,785,360 - 56,785,361RGD_MAPPER_PIPELINEGRCh38
GRCh371557,077,558 - 57,077,559RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Data Annotations    Click to see Annotation Detail View

Clinical Measurement
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS719499_HHumanethanol drink intake rate  IAGPrs11071294405850206Based on the EFO term IDGWAS_CATALOGPMID:30643258

Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS719499_HHumanalcohol consumption measurement  IAGPrs11071294405850206 GWAS_CATALOGPMID:30643258
Experimental Data Annotations     Click to see Annotation Detail View

Clinical Measurement

References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Position Markers

Peak: (rs11071294)
Human AssemblyChrPosition (strand)Source
GRCh381556,785,360 - 56,785,361RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2299958PRSTS330_HProstate tumor susceptibility QTL 330 (human)1.020.0151Prostate tumor susceptibility153479023060790230Human
407070523GWAS719499_Halcohol consumption measurement QTL GWAS719499 (human)5e-08alcohol consumption measurementethanol drink intake rate (CMO:0001407)155678536056785361Human
1559354LDLPS4_HLow density lipoprotein particle size QTL 4 (human)2.20.019LDL particle size153479023060790230Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS719499_H GCST007328 Alcohol consumption (drinks per week) 414,343 European ancestry individuals A 0.7735 5E-8 7.302 rs11071294 0.014534944 alcohol consumption measurement (EFO:0007878)
 PMID:30643258
Database Acc Id Source(s)
GWAS Catalog GCST007328 GWAS Catalog

RGD Curation Notes
Note Type Note Reference