GWAS716457_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS716457_H (blood protein measurement QTL GWAS716457 (human)) Homo sapiens

Symbol: GWAS716457_H
Name: blood protein measurement QTL GWAS716457 (human)
RGD ID: 407067481
Trait: blood protein measurement
Measurement Type: blood protein measurement   (CMO:0000028)    
LOD Score: Not Available
P Value: 1.0E-34
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh381543,528,519 - 43,528,520RGD_MAPPER_PIPELINEGRCh38
GRCh371543,820,717 - 43,820,718RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Data Annotations    Click to see Annotation Detail View

Clinical Measurement
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS716457_HHumanblood protein measurement  IAGPrs55707100405850206Based on the EFO term IDGWAS_CATALOGPMID:33462484

Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS716457_HHumanblood protein measurement  IAGPrs55707100405850206 GWAS_CATALOGPMID:33462484
Experimental Data Annotations     Click to see Annotation Detail View

Clinical Measurement

References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
736437MAP1Amicrotubule associated protein 1A154351095443531611Human

Position Markers

Peak: (rs55707100)
Human AssemblyChrPosition (strand)Source
GRCh381543,528,519 - 43,528,520RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
407089859GWAS738835_Hbody mass index QTL GWAS738835 (human)3e-15body mass indexbody mass index (BMI) (CMO:0000105)154352851943528520Human
1643273BW330_HBody Weight QTL 330 (human)1.050.014Body weightbody mass index152686671952866719Human
2299958PRSTS330_HProstate tumor susceptibility QTL 330 (human)1.020.0151Prostate tumor susceptibility153479023060790230Human
407013079GWAS662055_Htestosterone measurement QTL GWAS662055 (human)2e-33testosterone measurementserum testosterone level (CMO:0000568)154352851943528520Human
406909144GWAS558120_Hhigh density lipoprotein cholesterol measurement QTL GWAS558120 (human)1e-18high density lipoprotein cholesterol measurementblood high density lipoprotein cholesterol level (CMO:0000052)154352851943528520Human
406909145GWAS558121_Hhigh density lipoprotein cholesterol measurement QTL GWAS558121 (human)2e-22high density lipoprotein cholesterol measurementblood high density lipoprotein cholesterol level (CMO:0000052)154352851943528520Human
1643523BW284_HBody Weight QTL 284 (human)1.950.0013Body weight152179288947792889Human
407016280GWAS665256_Htriglyceride measurement QTL GWAS665256 (human)1e-17triglyceride measurementblood triglyceride level (CMO:0000118)154352851943528520Human
407067481GWAS716457_Hblood protein measurement QTL GWAS716457 (human)1e-34blood protein measurementblood protein measurement (CMO:0000028)154352851943528520Human
407285341GWAS934317_Hhigh density lipoprotein cholesterol measurement QTL GWAS934317 (human)3e-116high density lipoprotein cholesterol measurementblood high density lipoprotein cholesterol level (CMO:0000052)154352851943528520Human
407260121GWAS909097_Hfish oil supplement exposure measurement, triglyceride measurement QTL GWAS909097 (human)2e-13fish oil supplement exposure measurement, triglyceride measurementblood triglyceride level (CMO:0000118)154352851943528520Human
2289410BW327_HBody weight QTL 327 (human)3.320.0001Body fat amount151998012945980129Human
407315046GWAS964022_Hhigh density lipoprotein cholesterol measurement QTL GWAS964022 (human)3e-36high density lipoprotein cholesterol measurementblood high density lipoprotein cholesterol level (CMO:0000052)154352851943528520Human
407006560GWAS655536_Htestosterone measurement QTL GWAS655536 (human)8e-12testosterone measurementserum testosterone level (CMO:0000568)154352851943528520Human
407189615GWAS838591_Hblood protein measurement QTL GWAS838591 (human)6e-16blood protein measurementblood protein measurement (CMO:0000028)154352851943528520Human
407289578GWAS938554_Hhigh density lipoprotein cholesterol measurement QTL GWAS938554 (human)1e-72high density lipoprotein cholesterol measurementblood high density lipoprotein cholesterol level (CMO:0000052)154352851943528520Human
1559354LDLPS4_HLow density lipoprotein particle size QTL 4 (human)2.20.019LDL particle size153479023060790230Human
2289420BW314_HBody weight QTL 314 (human)2.720.0003Body weightlean mass151998012945980129Human
407248616GWAS897592_Hapolipoprotein A 1 measurement QTL GWAS897592 (human)3e-26apolipoprotein A 1 measurementblood apolipoprotein AI level (CMO:0000520)154352851943528520Human
407003888GWAS652864_Htriglyceride measurement QTL GWAS652864 (human)5e-28triglyceride measurementblood triglyceride level (CMO:0000118)154352851943528520Human
2289430BMD7_HBone mineral density QTL 7 (human)3.320.0001Bone mineral density151998012945980129Human
407199228GWAS848204_Hlipid measurement, high density lipoprotein cholesterol measurement QTL GWAS848204 (human)3e-09lipid measurement, high density lipoprotein cholesterol measurementblood high density lipoprotein cholesterol level (CMO:0000052)154352851943528520Human
407185404GWAS834380_Hcalcium measurement QTL GWAS834380 (human)7e-34calcium measurementblood calcium level (CMO:0000502)154352851943528520Human
407313659GWAS962635_Htestosterone measurement QTL GWAS962635 (human)6e-14testosterone measurementserum testosterone level (CMO:0000568)154352851943528520Human
407180152GWAS829128_Hblood protein measurement QTL GWAS829128 (human)1e-89blood protein measurementblood protein measurement (CMO:0000028)154352851943528520Human
407188741GWAS837717_HC-reactive protein measurement QTL GWAS837717 (human)3e-25C-reactive protein measurementblood C-reactive protein level (CMO:0003160)154352851943528520Human
407010694GWAS659670_Hhemoglobin measurement QTL GWAS659670 (human)4e-36hemoglobin measurementhemoglobin measurement (CMO:0000508)154352851943528520Human
407327104GWAS976080_Hsex hormone-binding globulin measurement QTL GWAS976080 (human)2e-24sex hormone-binding globulin measurement154352851943528520Human
407337486GWAS986462_HC-reactive protein measurement QTL GWAS986462 (human)5e-25C-reactive protein measurementblood C-reactive protein level (CMO:0003160)154352851943528520Human
407216649GWAS865625_Hblood protein measurement QTL GWAS865625 (human)1e-26blood protein measurementblood protein measurement (CMO:0000028)154352851943528520Human
407222666GWAS871642_Hblood protein measurement QTL GWAS871642 (human)2e-67blood protein measurementblood protein measurement (CMO:0000028)154352851943528520Human
407072027GWAS721003_Hserum albumin measurement QTL GWAS721003 (human)2e-12testosterone measurementserum testosterone level (CMO:0000568)154352851943528520Human
407336603GWAS985579_Hmean corpuscular volume QTL GWAS985579 (human)2e-11mean corpuscular volumemean corpuscular volume (CMO:0000038)154352851943528520Human
407333273GWAS982249_HIGF-1 measurement QTL GWAS982249 (human)5e-83IGF-1 measurementblood insulin-like growth factor 1 level (CMO:0001297)154352851943528520Human
407324441GWAS973417_Htriglyceride measurement QTL GWAS973417 (human)8e-82triglyceride measurementblood triglyceride level (CMO:0000118)154352851943528520Human
407246232GWAS895208_Halkaline phosphatase measurement QTL GWAS895208 (human)1e-20alkaline phosphatase measurementblood alkaline phosphatase activity level (CMO:0000576)154352851943528520Human
407326887GWAS975863_Htotal cholesterol measurement, very low density lipoprotein cholesterol measurement QTL GWAS975863 (human)1e-09total cholesterol measurement, very low density lipoprotein cholesterol measurementblood very low density lipoprotein cholesterol level (CMO:0000648)154352851943528520Human
406951587GWAS600563_Hplatelet count QTL GWAS600563 (human)2e-23platelet quantity (VT:0003179)platelet count (CMO:0000029)154352851943528520Human
1559411SCL107_HSerum cholesterol level QTL 107 (human)3.88Lipid leveltriglyceride152654355252543552Human
407176097GWAS825073_Hserum albumin measurement QTL GWAS825073 (human)1e-77serum albumin measurementserum albumin level (CMO:0000550)154352851943528520Human
407096742GWAS745718_Htriglyceride measurement QTL GWAS745718 (human)1e-41triglyceride measurementblood triglyceride level (CMO:0000118)154352851943528520Human
406963876GWAS612852_Hplatelet crit QTL GWAS612852 (human)2e-26platelet critplateletcrit (CMO:0001349)154352851943528520Human
407096741GWAS745717_Htriglyceride measurement QTL GWAS745717 (human)0.000003triglyceride measurementblood triglyceride level (CMO:0000118)154352851943528520Human
407096740GWAS745716_Htriglyceride measurement QTL GWAS745716 (human)1e-35triglyceride measurementblood triglyceride level (CMO:0000118)154352851943528520Human
407225897GWAS874873_Hblood protein measurement QTL GWAS874873 (human)4e-35blood protein measurementblood protein measurement (CMO:0000028)154352851943528520Human
407312424GWAS961400_Hsex hormone-binding globulin measurement QTL GWAS961400 (human)2e-47sex hormone-binding globulin measurement154352851943528520Human
407241385GWAS890361_HC-reactive protein measurement QTL GWAS890361 (human)6e-28C-reactive protein measurementblood C-reactive protein level (CMO:0003160)154352851943528520Human
406915890GWAS564866_Htriglyceride measurement QTL GWAS564866 (human)7e-10triglyceride measurementblood triglyceride level (CMO:0000118)154352851943528520Human
407086520GWAS735496_Hcholesteryl esters:total lipids ratio, high density lipoprotein cholesterol measurement QTL GWAS735496 (human)3e-10cholesteryl esters:total lipids ratio, high density lipoprotein cholesterol measurementblood high density lipoprotein cholesterol level (CMO:0000052)154352851943528520Human
407326264GWAS975240_Hserum gamma-glutamyl transferase measurement QTL GWAS975240 (human)1e-13serum gamma-glutamyl transferase measurementserum gamma-glutamyltransferase activity level (CMO:0002241)154352851943528520Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS558120_H GCST007140 High density lipoprotein cholesterol levels 76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals C 0.969 1E-18 18 rs55707100 0.096 high density lipoprotein cholesterol measurement (EFO:0004612)
 PMID:29507422
GWAS558121_H GCST007140 High density lipoprotein cholesterol levels 76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals C NR 2E-22 21.699 rs55707100 0.102 high density lipoprotein cholesterol measurement (EFO:0004612)
 PMID:29507422
GWAS564866_H GCST008702 Triglyceride levels up to 23,508 African ancestry individuals, 4,649 Asian ancestry individuals, up to 77,047 European ancestry individuals, 6,705 Hispanic individuals T 0.0328 7E-10 9.155 rs55707100 0.0506 triglyceride measurement (EFO:0004530)
 PMID:30926973
GWAS600563_H GCST004603 Platelet count 166,066 European ancestry individuals T 0.0261 2E-23 22.699 rs55707100 0.1142708 platelet count (EFO:0004309)
 PMID:27863252
GWAS612852_H GCST004607 Plateletcrit 164,339 European ancestry individuals T 0.0261 2E-26 25.699 rs55707100 0.1223192 platelet crit (EFO:0007985)
 PMID:27863252
GWAS652864_H GCST006613 Triglycerides 215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals T 0.0279 5E-28 27.302 rs55707100 0.0939 triglyceride measurement (EFO:0004530)
 PMID:30275531
GWAS655536_H GCST90012114 Total testosterone levels 425,097 European ancestry individuals C 0.97462 8E-12 11.097 rs55707100 0.0269106 testosterone measurement (EFO:0004908)
 PMID:32042192
GWAS659670_H GCST010083 Hemoglobin levels 684,122 European ancestry individuals T NR 4E-36 35.398 rs55707100 0.086 hemoglobin measurement (EFO:0004509)
 PMID:32327693
GWAS662055_H GCST90012113 Total testosterone levels 194,453 European ancestry men C 0.974801 2E-33 32.699 rs55707100 0.110844 testosterone measurement (EFO:0004908)
 PMID:32042192
GWAS665256_H GCST007849 Triglycerides up to 42,208 European ancestry individuals, up to 14,330 African ancestry individuals ? 0.0325 1E-17 17 rs55707100 0.09 triglyceride measurement (EFO:0004530)
 PMID:24507774
GWAS716457_H GCST90019522 Serum total protein levels 313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals T NR 1E-34 34 rs55707100 0.099 blood protein measurement (EFO:0007937)
 PMID:33462484
GWAS721003_H GCST90301944 Albumin levels 4,435 East Asian ancestry individuals, 11,340 South Asian ancestry individuals, 120,241 European ancestry individuals T 0.0264 2E-12 11.699 rs55707100 0.1014 serum albumin measurement (EFO:0004535)
 PMID:38448586
GWAS735496_H GCST90301998 Cholesteryl esters to total lipids ratio in large HDL 4,435 East Asian ancestry individuals, 11,340 South Asian ancestry individuals, 120,241 European ancestry individuals T 0.0264 3E-10 9.523 rs55707100 0.0932 cholesteryl esters:total lipids ratio (EFO:0020944)
high density lipoprotein cholesterol measurement (EFO:0004612)
 PMID:38448586
GWAS738835_H GCST90255621 Body mass index 1,122,049 European ancestry individuals C NR 3E-15 14.523 rs55707100 0.032 body mass index (EFO:0004340)
 PMID:36581621
GWAS745716_H GCST007142 Triglycerides 76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals C 0.969 1E-35 35 rs55707100 0.151 triglyceride measurement (EFO:0004530)
 PMID:29507422
GWAS745717_H GCST007142 Triglycerides 76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals C 0.973 0.000003 5.523 rs55707100 0.204 triglyceride measurement (EFO:0004530)
 PMID:29507422
GWAS745718_H GCST007142 Triglycerides 76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals C NR 1E-41 41 rs55707100 0.156 triglyceride measurement (EFO:0004530)
 PMID:29507422
GWAS825073_H GCST90019493 Serum albumin levels 313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals T NR 1E-77 77 rs55707100 0.1504 serum albumin measurement (EFO:0004535)
 PMID:33462484
GWAS829128_H GCST90314164 CNTN3/FETUB protein level ratio 43,509 European ancestry individuals ? NR 1E-89 89 rs55707100 0.407369 blood protein measurement (EFO:0007937)
 PMID:38412862
GWAS834380_H GCST90019500 Calcium levels 313,387 European ancestry individuals, 5,576 African ancestry individuals, 6,696 South Asian ancestry individuals T NR 7E-34 33.155 rs55707100 0.0977 calcium measurement (EFO:0004838)
 PMID:33462484
GWAS837717_H GCST90019499 C-reactive protein levels 341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals T NR 3E-25 24.523 rs55707100 0.0802 C-reactive protein measurement (EFO:0004458)
 PMID:33462484
GWAS838591_H GCST90313167 ADA2/VCAM1 protein level ratio 43,509 European ancestry individuals ? NR 6E-16 15.222 rs55707100 0.176881 blood protein measurement (EFO:0007937)
 PMID:38412862
GWAS848204_H GCST90092850 Total lipid levels in large HDL 115,082 European ancestry individuals C 0.974123 3E-9 8.523 rs55707100 0.0675826 lipid measurement (EFO:0004529)
high density lipoprotein cholesterol measurement (EFO:0004612)
 PMID:35213538
GWAS865625_H GCST90313153 ACE2/GGT1 protein level ratio 43,509 European ancestry individuals ? NR 1E-26 26 rs55707100 0.240321 blood protein measurement (EFO:0007937)
 PMID:38412862
GWAS871642_H GCST90314746 F9/FETUB protein level ratio 43,509 European ancestry individuals ? NR 2E-67 66.699 rs55707100 0.362012 blood protein measurement (EFO:0007937)
 PMID:38412862
GWAS874873_H GCST90313314 APOM/ERBB3 protein level ratio 43,509 European ancestry individuals ? NR 4E-35 34.398 rs55707100 0.27562 blood protein measurement (EFO:0007937)
 PMID:38412862
GWAS890361_H GCST90029070 C-reactive protein levels 575,531 European ancestry individuals T NR 6E-28 27.222 rs55707100 0.069 C-reactive protein measurement (EFO:0004458)
 PMID:35459240
GWAS895208_H GCST90019494 Serum alkaline phosphatase levels 342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals T NR 1E-20 20 rs55707100 0.0721 alkaline phosphatase measurement (EFO:0004533)
 PMID:33462484
GWAS897592_H GCST90019495 Apolipoprotein A1 levels 311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals T NR 3E-26 25.523 rs55707100 0.0855 apolipoprotein A 1 measurement (EFO:0004614)
 PMID:33462484
GWAS909097_H GCST011925 Triglyceride levels x fish oil supplementation interaction (2df) 73,908 European ancestry individuals T 0.0247 2E-13 12.699 rs55707100 N/A fish oil supplement exposure measurement (EFO:0600007)
triglyceride measurement (EFO:0004530)
 PMID:33760818
GWAS934317_H GCST90239649 High density lipoprotein cholesterol levels 40,963 South Asian ancestry individuals, 48,057 Hispanic individuals, 99,432 Admixed African or African ancestry individuals, 146,492 East Asian ancestry individuals, 1,320,016 European ancestry individuals ? NR 3E-116 115.523 rs55707100 N/A high density lipoprotein cholesterol measurement (EFO:0004612)
 PMID:34887591
GWAS938554_H GCST90239652 High density lipoprotein cholesterol levels 1,320,016 European ancestry individuals T 0.0264178 1E-72 72 rs55707100 0.101589 high density lipoprotein cholesterol measurement (EFO:0004612)
 PMID:34887591
GWAS961400_H GCST90019518 Sex hormone-binding globulin levels 310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals T NR 2E-47 46.699 rs55707100 0.1171 sex hormone-binding globulin measurement (EFO:0004696)
 PMID:33462484
GWAS962635_H GCST90027095 Total testosterone levels 148,248 British ancestry men T 0.02 6E-14 13.222 rs55707100 0.42 testosterone measurement (EFO:0004908)
 PMID:34321204
GWAS964022_H GCST90019510 High density lipoprotein cholesterol levels 313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals T NR 3E-36 35.523 rs55707100 0.1012 high density lipoprotein cholesterol measurement (EFO:0004612)
 PMID:33462484
None Available GCST90019520 Testosterone levels 310,461 European ancestry individuals, 5,453 African ancestry individuals, 6,680 South Asian ancestry individuals T NR 2E-12 11.699 rs55707100 0.0569 testosterone measurement (EFO:0004908)
 PMID:33462484
GWAS973417_H GCST90019523 Triglyceride levels 342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals T NR 8E-82 81.097 rs55707100 0.1479 triglyceride measurement (EFO:0004530)
 PMID:33462484
GWAS975240_H GCST90019507 Gamma glutamyl transferase levels 342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals T NR 1E-13 13 rs55707100 0.0572 serum gamma-glutamyl transferase measurement (EFO:0004532)
 PMID:33462484
GWAS975863_H GCST90092968 Cholesterol levels in small VLDL 115,082 European ancestry individuals C 0.974123 1E-9 9 rs55707100 0.0786307 total cholesterol measurement (EFO:0004574)
very low density lipoprotein cholesterol measurement (EFO:0008317)
 PMID:35213538
GWAS976080_H GCST90027091 Sex hormone-binding globulin levels 148,248 British ancestry men T 0.02 2E-24 23.699 rs55707100 2.6 sex hormone-binding globulin measurement (EFO:0004696)
 PMID:34321204
GWAS982249_H GCST90019511 Insulin-like growth factor 1 levels 340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals T NR 5E-83 82.302 rs55707100 0.1494 IGF-1 measurement (EFO:0004627)
 PMID:33462484
GWAS985579_H GCST90018966 Mean corpuscular volume 350,473 European ancestry individuals, 129,832 East Asian ancestry individuals T NR 2E-11 10.699 rs55707100 0.0513 mean corpuscular volume (EFO:0004526)
 PMID:34594039
GWAS986462_H GCST90179146 C-reactive protein levels (MTAG) 575,531 European ancestry individuals T NR 5E-25 24.302 rs55707100 0.066807 C-reactive protein measurement (EFO:0004458)
 PMID:36376304
Database Acc Id Source(s)
GWAS Catalog GCST90019522 GWAS Catalog

RGD Curation Notes
Note Type Note Reference