GWAS713251_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS713251_H (red blood cell density measurement QTL GWAS713251 (human)) Homo sapiens

Symbol: GWAS713251_H
Name: red blood cell density measurement QTL GWAS713251 (human)
RGD ID: 407064275
Trait: red blood cell density measurement
LOD Score: Not Available
P Value: 2.0E-11
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh38111,801,798 - 11,801,799RGD_MAPPER_PIPELINEGRCh38
GRCh37111,861,855 - 11,861,856RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS713251_HHumanred blood cell density measurement  IAGPrs45603435405850206 GWAS_CATALOGPMID:32888493
References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
733483MTHFRmethylenetetrahydrofolate reductase11178572311805964Human

Position Markers

Peak: (rs45603435)
Human AssemblyChrPosition (strand)Source
GRCh38111,801,798 - 11,801,799RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1298451OSTEAR17_HOsteoarthritis QTL 17 (human)2.40.0004Joint/bone inflammationosteoarthritis11125188105Human
407064275GWAS713251_Hred blood cell density measurement QTL GWAS713251 (human)2e-11red blood cell density measurement11180179811801799Human
1576329MYI9_HMyocardial infarction susceptibility QTL 9 (human)12Myocardial infarction susceptibilityearly-onset1758550333585503Human
407289856GWAS938832_Hmean arterial pressure, unipolar depression QTL GWAS938832 (human)3e-17mean arterial pressure, unipolar depressionmean arterial blood pressure (CMO:0000009)11180179811801799Human
1298463BP9_HBlood pressure QTL 9 (human)3.9Blood pressurehypertension susceptibility1125188105Human
1576325MYI1_HMyocardial infarction susceptibility QTL 1 (human)11.681e-12Myocardial infarction susceptibilityearly-onset1758550333585503Human
1643380BW316_HBody weight QTL 316 (human)2.620.0002Body weightBMI1758550333585503Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS713251_H GCST90002363 Red blood cell count 545,203 European ancestry individuals G 0.162098 2E-11 10.699 rs45603435 0.01686 red blood cell density measurement (EFO:0007978)
 PMID:32888493
None Available GCST90093177 Mean arterial pressure x depressive symptoms interaction (2df test) 43,335 European ancestry individuals ? NR 3E-17 16.523 rs45603435 N/A mean arterial pressure (EFO:0006340)
 PMID:34734193
Database Acc Id Source(s)
GWAS Catalog GCST90002363 GWAS Catalog

RGD Curation Notes
Note Type Note Reference