GWAS712317_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS712317_H (branched-chain, straight-chain, or cyclopropyl 12:1 fatty acid measurement QTL GWAS712317 (human)) Homo sapiens

Symbol: GWAS712317_H
Name: branched-chain, straight-chain, or cyclopropyl 12:1 fatty acid measurement QTL GWAS712317 (human)
RGD ID: 407063341
Trait: branched-chain, straight-chain, or cyclopropyl 12:1 fatty acid measurement
LOD Score: Not Available
P Value: 1.0E-16
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh381473,573,432 - 73,573,433RGD_MAPPER_PIPELINEGRCh38
GRCh371474,040,136 - 74,040,137RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS712317_HHumanbranched-chain, straight-chain, or cyclopropyl 12:1 fatty acid measurement  IAGPrs151154986405850206 GWAS_CATALOGPMID:37277652
References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
1602622HEATR4HEAT repeat containing 4147347848473633814Human
1605691ACOT2acyl-CoA thioesterase 2147356762073575658Human

Position Markers

Peak: (rs151154986)
Human AssemblyChrPosition (strand)Source
GRCh381473,573,432 - 73,573,433RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
407025825GWAS674801_Hundecenoylcarnitine (C11:1) measurement QTL GWAS674801 (human)3e-28undecenoylcarnitine (C11:1) measurement147357343273573433Human
406923685GWAS572661_Hbranched-chain, straight-chain, or cyclopropyl 12:1 fatty acid measurement QTL GWAS572661 (human)4e-36branched-chain, straight-chain, or cyclopropyl 12:1 fatty acid measurement147357343273573433Human
407093926GWAS742902_Hmetabolite measurement QTL GWAS742902 (human)4e-64metabolite measurement147357343273573433Human
407313697GWAS962673_H(2 or 3)-decenoate (10:1n7 or n8) measurement QTL GWAS962673 (human)6e-11(2 or 3)-decenoate (10:1n7 or n8) measurement147357343273573433Human
406910441GWAS559417_Hdodecadienoate (12:2) measurement QTL GWAS559417 (human)9e-47dodecadienoate (12:2) measurement147357343273573433Human
407314732GWAS963708_Hdodecadienoate (12:2) measurement QTL GWAS963708 (human)1e-24dodecadienoate (12:2) measurement147357343273573433Human
407068047GWAS717023_Hmetabolite measurement QTL GWAS717023 (human)2e-61metabolite measurement147357343273573433Human
407063341GWAS712317_Hbranched-chain, straight-chain, or cyclopropyl 12:1 fatty acid measurement QTL GWAS712317 (human)1e-16branched-chain, straight-chain, or cyclopropyl 12:1 fatty acid measurement147357343273573433Human
407026130GWAS675106_Hdodecadienoate (12:2) measurement QTL GWAS675106 (human)1e-43dodecadienoate (12:2) measurement147357343273573433Human
407094003GWAS742979_H(2 or 3)-decenoate (10:1n7 or n8) measurement QTL GWAS742979 (human)7e-15(2 or 3)-decenoate (10:1n7 or n8) measurement147357343273573433Human
407065430GWAS714406_Hdodecadienoate (12:2) measurement QTL GWAS714406 (human)6e-23dodecadienoate (12:2) measurement147357343273573433Human
407312368GWAS961344_Hbranched-chain, straight-chain, or cyclopropyl 12:1 fatty acid measurement QTL GWAS961344 (human)2e-17branched-chain, straight-chain, or cyclopropyl 12:1 fatty acid measurement147357343273573433Human
407026426GWAS675402_Hbranched-chain, straight-chain, or cyclopropyl 12:1 fatty acid measurement QTL GWAS675402 (human)5e-28branched-chain, straight-chain, or cyclopropyl 12:1 fatty acid measurement147357343273573433Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS559417_H GCST90102943 Dodecadienoate (12:2) (X-21343) levels 8,809 European ancestry individuals A NR 9E-47 46.046 rs151154986 0.593 dodecadienoate (12:2) measurement (EFO:0800572)
 PMID:35050183
GWAS572661_H GCST90102896 Branched-chain, straight-chain, or cyclopropyl 12:1 fatty acid (X-22764) levels 8,809 European ancestry individuals A NR 4E-36 35.398 rs151154986 0.53 branched-chain, straight-chain, or cyclopropyl 12:1 fatty acid measurement (EFO:0800662)
 PMID:35050183
GWAS674801_H GCST90200236 Undecenoylcarnitine (C11:1) levels 8,253 European ancestry individuals A 0.0297222 3E-28 27.523 rs151154986 0.48872 undecenoylcarnitine (C11:1) measurement (EFO:0800588)
 PMID:36635386
GWAS675106_H GCST90200190 Dodecadienoate (12:2) levels 8,244 European ancestry individuals A 0.0295118 1E-43 43 rs151154986 0.604805 dodecadienoate (12:2) measurement (EFO:0800572)
 PMID:36635386
GWAS675402_H GCST90200249 Branched-chain, straight-chain, or cyclopropyl 12:1 fatty acid levels 8,256 European ancestry individuals A 0.029344 5E-28 27.302 rs151154986 0.479922 branched-chain, straight-chain, or cyclopropyl 12:1 fatty acid measurement (EFO:0800662)
 PMID:36635386
GWAS712317_H GCST90264879 Plasma branched-chain, straight-chain, or cyclopropyl 12:1 fatty acid* levels in chronic kidney disease 4,945 European ancestry individuals A 0.03 1E-16 16 rs151154986 0.537 branched-chain, straight-chain, or cyclopropyl 12:1 fatty acid measurement (EFO:0800662)
 PMID:37277652
GWAS714406_H GCST90265054 Plasma dodecadienoate (12:2)* levels in chronic kidney disease 4,960 European ancestry individuals A 0.03 6E-23 22.222 rs151154986 0.453 dodecadienoate (12:2) measurement (EFO:0800572)
 PMID:37277652
GWAS717023_H GCST90245707 X-22764 levels 14,296 European ancestry individuals A 0.0311 2E-61 60.699 rs151154986 0.47113824 metabolite measurement (EFO:0004725)
 PMID:36357675
GWAS742902_H GCST90245668 X-21343 levels 14,296 European ancestry individuals A 0.0314 4E-64 63.398 rs151154986 0.47785544 metabolite measurement (EFO:0004725)
 PMID:36357675
GWAS742979_H GCST90200263 (2 or 3)-decenoate (10:1n7 or n8) levels 8,124 European ancestry individuals A 0.0293248 7E-15 14.155 rs151154986 0.345378 (2 or 3)-decenoate (10:1n7 or n8) measurement (EFO:0800594)
 PMID:36635386
GWAS961344_H GCST90140296 Branched-chain, straight-chain, or cyclopropyl 12:1 fatty acid levels 6,136 Finnish ancestry individuals A NR 2E-17 16.699 rs151154986 0.88 branched-chain, straight-chain, or cyclopropyl 12:1 fatty acid measurement (EFO:0800662)
 PMID:35347128
GWAS962673_H GCST90140169 (2 or 3)-decenoate (10:1n7 or n8) levels 6,136 Finnish ancestry individuals A NR 6E-11 10.222 rs151154986 0.68 (2 or 3)-decenoate (10:1n7 or n8) measurement (EFO:0800594)
 PMID:35347128
GWAS963708_H GCST90140147 Dodecadienoate (12:2) levels 6,136 Finnish ancestry individuals A NR 1E-24 24 rs151154986 1.06 dodecadienoate (12:2) measurement (EFO:0800572)
 PMID:35347128
Database Acc Id Source(s)
GWAS Catalog GCST90264879 GWAS Catalog

RGD Curation Notes
Note Type Note Reference