GWAS710624_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL: GWAS710624_H (psoriasis, type 2 diabetes mellitus QTL GWAS710624 (human)) Homo sapiens

Symbol: GWAS710624_H
Name: psoriasis, type 2 diabetes mellitus QTL GWAS710624 (human)
RGD ID: 407061648
Trait: psoriasis, type 2 diabetes mellitus
LOD Score: Not Available
P Value: 5.0E-10
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh38316,969,982 - 16,969,983RGD_MAPPER_PIPELINEGRCh38
GRCh37317,011,474 - 17,011,475RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Disease Annotations     Click to see Annotation Detail View
psoriasis  (IAGP)

Phenotype Annotations     Click to see Annotation Detail View

Human Phenotype
References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
1314267PLCL2phospholipase C like 231688495517090606Human

Position Markers

Peak: (rs3906814)
Human AssemblyChrPosition (strand)Source
GRCh38316,969,982 - 16,969,983RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
407061648GWAS710624_Hpsoriasis, type 2 diabetes mellitus QTL GWAS710624 (human)5e-10psoriasis, type 2 diabetes mellitus31696998216969983Human
2316345GLUCO224_HGlucose level QTL 224 (human)1.270.008Glucose level3121543441Human
407061961GWAS710937_Hpsoriasis, type 2 diabetes mellitus QTL GWAS710937 (human)3e-08psoriasis, type 2 diabetes mellitus31696998216969983Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS710624_H GCST011990 Psoriasis or type 2 diabetes (trans-disease meta-analysis)(opposite effect) 11,024 European ancestry psoriasis cases, 74,124 European ancestry diabetes cases, 840,342 European ancestry controls C NR 5E-10 9.302 rs3906814 1.07 psoriasis (EFO:0000676)
PMID:33385400
GWAS710937_H GCST011991 Psoriasis or type 2 diabetes (trans-disease meta-analysis) 11,024 European ancestry psoriasis cases, 74,124 European ancestry diabetes cases, 840,342 European ancestry controls C NR 3E-8 7.523 rs3906814 1.06 psoriasis (EFO:0000676)
PMID:33385400
Database Acc Id Source(s)
GWAS Catalog GCST011990 GWAS Catalog

RGD Curation Notes
Note Type Note Reference