GWAS710496_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS710496_H (reaction time measurement QTL GWAS710496 (human)) Homo sapiens

Symbol: GWAS710496_H
Name: reaction time measurement QTL GWAS710496 (human)
RGD ID: 407061520
Trait: reaction time measurement
LOD Score: Not Available
P Value: 4.0E-7
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh3816,803,713 - 6,803,714RGD_MAPPER_PIPELINEGRCh38
GRCh3716,863,773 - 6,863,774RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS710496_HHumanreaction time measurement  IAGPrs11122155405850206 GWAS_CATALOGPMID:29844566
References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
1318785CAMTA1calmodulin binding transcription activator 1167854547769706Human

Position Markers

Peak: (rs11122155)
Human AssemblyChrPosition (strand)Source
GRCh3816,803,713 - 6,803,714RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1298451OSTEAR17_HOsteoarthritis QTL 17 (human)2.40.0004Joint/bone inflammationosteoarthritis11125188105Human
407061520GWAS710496_Hreaction time measurement QTL GWAS710496 (human)0.0000004reaction time measurement168037136803714Human
407191238GWAS840214_Hmean fractional anisotropy measurement QTL GWAS840214 (human)4e-08mean fractional anisotropy measurement168037136803714Human
1298463BP9_HBlood pressure QTL 9 (human)3.9Blood pressurehypertension susceptibility1125188105Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS710496_H GCST006268 Reaction time 330,069 European ancestry individuals ? NR 4E-7 6.398 rs11122155 0.0088635 reaction time measurement (EFO:0008393)
 PMID:29844566
GWAS840214_H GCST90281341 Corpus callosum fractional anisotropy (genu) 31,727 British ancestry individuals ? NR 4E-8 7.398 rs11122155 N/A mean fractional anisotropy measurement (EFO:0008399)
 PMID:37164063
Database Acc Id Source(s)
GWAS Catalog GCST006268 GWAS Catalog

RGD Curation Notes
Note Type Note Reference