GWAS710140_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS710140_H (C-reactive protein measurement QTL GWAS710140 (human)) Homo sapiens

Symbol: GWAS710140_H
Name: C-reactive protein measurement QTL GWAS710140 (human)
RGD ID: 407061164
Trait: C-reactive protein measurement
Measurement Type: blood C-reactive protein level   (CMO:0003160)    
LOD Score: Not Available
P Value: 3.0E-16
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh381628,607,387 - 28,607,388RGD_MAPPER_PIPELINEGRCh38
GRCh371628,618,708 - 28,618,709RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Data Annotations    Click to see Annotation Detail View

Clinical Measurement
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS710140_HHumanblood C-reactive protein level  IAGPrs11648192405850206Based on the EFO term IDGWAS_CATALOGPMID:31900758

Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS710140_HHumanC-reactive protein measurement  IAGPrs11648192405850206 GWAS_CATALOGPMID:31900758
Experimental Data Annotations     Click to see Annotation Detail View

Clinical Measurement

References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
735435SULT1A1sulfotransferase family 1A member 1162860525828623375Human

Position Markers

Peak: (rs11648192)
Human AssemblyChrPosition (strand)Source
GRCh381628,607,387 - 28,607,388RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
407073541GWAS722517_Hintelligence QTL GWAS722517 (human)1e-10intelligence162860738728607388Human
407061164GWAS710140_HC-reactive protein measurement QTL GWAS710140 (human)3e-16C-reactive protein measurementblood C-reactive protein level (CMO:0003160)162860738728607388Human
406946702GWAS595678_Hintelligence QTL GWAS595678 (human)1e-13intelligence162860738728607388Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS595678_H GCST006269 General cognitive ability up to 300,486 European ancestry individuals T NR 1E-13 13 rs11648192 7.444 intelligence (EFO:0004337)
 PMID:29844566
GWAS710140_H GCST009777 C-reactive protein levels 418,642 British ancestry individuals C 0.564699 3E-16 15.523 rs11648192 0.016648 C-reactive protein measurement (EFO:0004458)
 PMID:31900758
GWAS722517_H GCST005316 Intelligence (MTAG) 120,934 British ancestry individuals, 127,548 individuals T NR 1E-10 10 rs11648192 0.019943852 intelligence (EFO:0004337)
 PMID:29326435
Database Acc Id Source(s)
GWAS Catalog GCST009777 GWAS Catalog

RGD Curation Notes
Note Type Note Reference