GWAS708881_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS708881_H (apolipoprotein B measurement QTL GWAS708881 (human)) Homo sapiens

Symbol: GWAS708881_H
Name: apolipoprotein B measurement QTL GWAS708881 (human)
RGD ID: 407059905
Trait: apolipoprotein B measurement
Measurement Type: blood apoliprotein B level   (CMO:0000522)    
LOD Score: Not Available
P Value: 1.0E-8
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh381473,149,387 - 73,149,388RGD_MAPPER_PIPELINEGRCh38
GRCh371473,616,095 - 73,616,096RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Data Annotations    Click to see Annotation Detail View

Clinical Measurement
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS708881_HHumanblood apoliprotein B level  IAGPrs10151436405850206Based on the EFO term IDGWAS_CATALOGPMID:32203549

Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS708881_HHumanapolipoprotein B measurement  IAGPrs10151436405850206 GWAS_CATALOGPMID:32203549
Experimental Data Annotations     Click to see Annotation Detail View

Clinical Measurement

References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
731724PSEN1presenilin 1147313641773223691Human

Position Markers

Peak: (rs10151436)
Human AssemblyChrPosition (strand)Source
GRCh381473,149,387 - 73,149,388RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
407059905GWAS708881_Hapolipoprotein B measurement QTL GWAS708881 (human)1e-08apolipoprotein B measurementblood apoliprotein B level (CMO:0000522)147314938773149388Human
407400227GWAS1049203_HHbA1c measurement QTL GWAS1049203 (human)4e-11HbA1c measurementblood hemoglobin A1c level (CMO:0002786)147314938773149388Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS708881_H GCST010243 Apolipoprotein B levels 439,214 European ancestry individuals A 0.887898 1E-8 8 rs10151436 0.0188241 apolipoprotein B measurement (EFO:0004615)
 PMID:32203549
GWAS1049203_H GCST90002244 Glycated hemoglobin levels 146,806 European ancestry individuals A 0.8901 4E-11 10.398 rs10151436 0.013 HbA1c measurement (EFO:0004541)
 PMID:34059833
Database Acc Id Source(s)
GWAS Catalog GCST010243 GWAS Catalog

RGD Curation Notes
Note Type Note Reference