GWAS708065_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS708065_H (vitamin D measurement QTL GWAS708065 (human)) Homo sapiens

Symbol: GWAS708065_H
Name: vitamin D measurement QTL GWAS708065 (human)
RGD ID: 407059089
Trait: vitamin D measurement
LOD Score: Not Available
P Value: 2.0E-25
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh38117,233,700 - 17,233,701RGD_MAPPER_PIPELINEGRCh38
GRCh37117,560,195 - 17,560,196RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS708065_HHumanvitamin D measurement  IAGPrs35408430405850206 GWAS_CATALOGPMID:32242144
References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
1344006PADI1peptidyl arginine deiminase 111720512817246007Human

Position Markers

Peak: (rs35408430)
Human AssemblyChrPosition (strand)Source
GRCh38117,233,700 - 17,233,701RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1298451OSTEAR17_HOsteoarthritis QTL 17 (human)2.40.0004Joint/bone inflammationosteoarthritis11125188105Human
1576329MYI9_HMyocardial infarction susceptibility QTL 9 (human)12Myocardial infarction susceptibilityearly-onset1758550333585503Human
407059089GWAS708065_Hvitamin D measurement QTL GWAS708065 (human)2e-25vitamin D measurement11723370017233701Human
1298463BP9_HBlood pressure QTL 9 (human)3.9Blood pressurehypertension susceptibility1125188105Human
1576325MYI1_HMyocardial infarction susceptibility QTL 1 (human)11.681e-12Myocardial infarction susceptibilityearly-onset1758550333585503Human
1643380BW316_HBody weight QTL 316 (human)2.620.0002Body weightBMI1758550333585503Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS708065_H GCST90000616 Serum 25-Hydroxyvitamin D levels 417,580 European ancestry individuals C 0.657806 2E-25 24.699 rs35408430 0.022 vitamin D measurement (EFO:0004631)
 PMID:32242144
None Available GCST90448682 25-hydroxyvitamin D levels (skin colour stratified) 409,654 European ancestry individuals C 0.66 2E-23 22.699 rs35408430 0.021 vitamin D measurement (EFO:0004631)
 PMID:37963177
Database Acc Id Source(s)
GWAS Catalog GCST90000616 GWAS Catalog

RGD Curation Notes
Note Type Note Reference