GWAS697489_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS697489_H (asthma QTL GWAS697489 (human)) Homo sapiens

Symbol: GWAS697489_H
Name: asthma QTL GWAS697489 (human)
RGD ID: 407048513
Trait: asthma
LOD Score: Not Available
P Value: 8.0E-10
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh38316,930,719 - 16,930,720RGD_MAPPER_PIPELINEGRCh38
GRCh37316,972,211 - 16,972,212RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS697489_HHumanasthma  IAGPrs2014490405850206 GWAS_CATALOGPMID:32296059
References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
1314267PLCL2phospholipase C like 231688495517090606Human

Position Markers

Peak: (rs2014490)
Human AssemblyChrPosition (strand)Source
GRCh38316,930,719 - 16,930,720RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
407048513GWAS697489_Hasthma QTL GWAS697489 (human)8e-10asthma31693071916930720Human
407049387GWAS698363_Hasthma QTL GWAS698363 (human)9e-10asthma31693071916930720Human
2316345GLUCO224_HGlucose level QTL 224 (human)1.270.008Glucose level3121543441Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS697489_H GCST010043 Asthma 84,492 European ancestry cases, 2,149 African American cases, 606 Hispanic cases, 1,239 Japanese ancestry cases, 437,036 European ancestry controls, 6,055 African American controls, 792 Hispanic controls, 3,976 Japanese ancestry controls G 0.65 8E-10 9.097 rs2014490 N/A PMID:32296059
GWAS698363_H GCST010042 Asthma 64,538 European ancestry cases, 239,321 European ancestry controls G 0.65256 9E-10 9.046 rs2014490 1.0392638 PMID:32296059
Database Acc Id Source(s)
GWAS Catalog GCST010043 GWAS Catalog

RGD Curation Notes
Note Type Note Reference