GWAS693675_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS693675_H (body mass index QTL GWAS693675 (human)) Homo sapiens

Symbol: GWAS693675_H
Name: body mass index QTL GWAS693675 (human)
RGD ID: 407044699
Trait: body mass index
Measurement Type: body mass index (BMI)   (CMO:0000105)    
LOD Score: Not Available
P Value: 9.0E-9
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh381547,629,141 - 47,629,142RGD_MAPPER_PIPELINEGRCh38
GRCh371547,921,338 - 47,921,339RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model




Clinical Measurement
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS693675_HHumanbody mass index (BMI)  IAGPrs2573566405850206Based on the EFO term IDGWAS_CATALOGPMID:31669095

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS693675_HHumanbody mass index  IAGPrs2573566405850206 GWAS_CATALOGPMID:31669095

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
1605040SEMA6Dsemaphorin 6D154718408947774228Human


Peak: (rs2573566)
Human AssemblyChrPosition (strand)Source
GRCh381547,629,141 - 47,629,142RGD_MAPPER_PIPELINE


The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1643273BW330_HBody Weight QTL 330 (human)1.050.014Body weightbody mass index152686671952866719Human
1559411SCL107_HSerum cholesterol level QTL 107 (human)3.88Lipid leveltriglyceride152654355252543552Human
597328526GWAS1424600_Hbody mass index QTL GWAS1424600 (human)1e-09body mass indexbody mass index (BMI) (CMO:0000105)154762914147629142Human
2299958PRSTS330_HProstate tumor susceptibility QTL 330 (human)1.020.0151Prostate tumor susceptibility153479023060790230Human
597177293GWAS1273367_Hbody mass index QTL GWAS1273367 (human)2e-08body mass indexbody mass index (BMI) (CMO:0000105)154762914147629142Human
407044699GWAS693675_Hbody mass index QTL GWAS693675 (human)9e-09body mass indexbody mass index (BMI) (CMO:0000105)154762914147629142Human
1643523BW284_HBody Weight QTL 284 (human)1.950.0013Body weight152179288947792889Human
1559354LDLPS4_HLow density lipoprotein particle size QTL 4 (human)2.20.019LDL particle size153479023060790230Human



Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS693675_H GCST009871 Body mass index 457,822 European ancestry individuals ? NR 9E-9 8.046 rs2573566 N/A body mass index (EFO:0004340)
 PMID:31669095
GWAS1273367_H GCST90255621 Body mass index 1,122,049 European ancestry individuals C NR 2E-8 7.699 rs2573566 0.0152 body mass index (EFO:0004340)
 PMID:36581621
GWAS1424600_H GCST90301650 Body mass index 441,761 European ancestry individuals A NR 1E-9 9 rs2573566 0.0215748 body mass index (EFO:0004340)
 PMID:37280435
Database
Acc Id
Source(s)
GWAS Catalog GCST009871 GWAS Catalog

Note Type Note Reference