GWAS690020_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS690020_H (Takayasu arteritis QTL GWAS690020 (human)) Homo sapiens

Symbol: GWAS690020_H
Name: Takayasu arteritis QTL GWAS690020 (human)
RGD ID: 407041044
Trait: Takayasu arteritis
LOD Score: Not Available
P Value: 7.0E-6
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh38378,644,690 - 78,644,691RGD_MAPPER_PIPELINEGRCh38
GRCh37378,693,840 - 78,693,841RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS690020_HHumanTakayasu arteritis  IAGPrs2660739405850206 GWAS_CATALOGPMID:25604533
Disease Annotations     Click to see Annotation Detail View

References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
735617ROBO1roundabout guidance receptor 137859723979767998Human

Position Markers

Peak: (rs2660739)
Human AssemblyChrPosition (strand)Source
GRCh38378,644,690 - 78,644,691RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
407041044GWAS690020_HTakayasu arteritis QTL GWAS690020 (human)0.000007Takayasu arteritis37864469078644691Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS690020_H GCST006575 Takayasu arteritis 516 Turkish ancestry cases, 119 European ancestry cases, 462 Turkish ancestry controls, 993 European ancestry controls A 0.06 0.000007 5.155 rs2660739 2.46 Takayasu arteritis (EFO:1001857)
 PMID:25604533
Database Acc Id Source(s)
GWAS Catalog GCST006575 GWAS Catalog

RGD Curation Notes
Note Type Note Reference