GWAS687151_H QTL Report (Homo sapiens) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
QTL Registration

QTL: GWAS687151_H (thyroid stimulating hormone measurement QTL GWAS687151 (human)) Homo sapiens

Symbol: GWAS687151_H
Name: thyroid stimulating hormone measurement QTL GWAS687151 (human)
RGD ID: 407038175
Trait: thyroid stimulating hormone measurement
Measurement Type: blood thyroid stimulating hormone level   (CMO:0001247)    
LOD Score: Not Available
P Value: 2E-107
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh381549,549,483 - 49,549,484RGD_MAPPER_PIPELINEGRCh38
GRCh371549,841,680 - 49,841,681RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Data Annotations    Click to see Annotation Detail View

Clinical Measurement
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS687151_HHumanblood thyroid stimulating hormone level  IAGPrs7182948405850206Based on the EFO term IDGWAS_CATALOGPMID:37872160

Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS687151_HHumanthyroid stimulating hormone measurement  IAGPrs7182948405850206 GWAS_CATALOGPMID:37872160
Experimental Data Annotations     Click to see Annotation Detail View

Clinical Measurement

References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
1605268FAM227Bfamily with sequence similarity 227 member B154932697049620818Human
38650919LOC105370811uncharacterized LOC105370811154953837449557589Human

Position Markers

Peak: (rs7182948)
Human AssemblyChrPosition (strand)Source
GRCh381549,549,483 - 49,549,484RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1643273BW330_HBody Weight QTL 330 (human)1.050.014Body weightbody mass index152686671952866719Human
406902210GWAS551186_Hlung adenocarcinoma QTL GWAS551186 (human)2e-09lung adenocarcinoma154954948349549484Human
1559411SCL107_HSerum cholesterol level QTL 107 (human)3.88Lipid leveltriglyceride152654355252543552Human
2299958PRSTS330_HProstate tumor susceptibility QTL 330 (human)1.020.0151Prostate tumor susceptibility153479023060790230Human
1559354LDLPS4_HLow density lipoprotein particle size QTL 4 (human)2.20.019LDL particle size153479023060790230Human
407038175GWAS687151_Hthyroid stimulating hormone measurement QTL GWAS687151 (human)2e-107thyroid stimulating hormone measurementblood thyroid stimulating hormone level (CMO:0001247)154954948349549484Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS551186_H GCST004744 Lung adenocarcinoma 11,273 European ancestry cases, 55,483 European ancestry controls G 0.707325111999999 2E-9 8.699 rs7182948 1.1155612 lung adenocarcinoma (EFO:0000571)
 PMID:28604730
GWAS687151_H GCST90296333 Thyroid stimulating hormone levels 247,107 European ancestry individuals A 0.2654 2E-107 106.699 rs7182948 0.0622 thyroid stimulating hormone measurement (EFO:0004748)
 PMID:37872160
Database Acc Id Source(s)
GWAS Catalog GCST90296333 GWAS Catalog

RGD Curation Notes
Note Type Note Reference