GWAS686285_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS686285_H (thyroid stimulating hormone measurement QTL GWAS686285 (human)) Homo sapiens

Symbol: GWAS686285_H
Name: thyroid stimulating hormone measurement QTL GWAS686285 (human)
RGD ID: 407037309
Trait: thyroid stimulating hormone measurement
Measurement Type: blood thyroid stimulating hormone level   (CMO:0001247)    
LOD Score: Not Available
P Value: 5.0E-51
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh381549,360,033 - 49,360,034RGD_MAPPER_PIPELINEGRCh38
GRCh371549,652,230 - 49,652,231RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Data Annotations    Click to see Annotation Detail View

Clinical Measurement
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS686285_HHumanblood thyroid stimulating hormone level  IAGPrs9744816405850206Based on the EFO term IDGWAS_CATALOGPMID:37872160

Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS686285_HHumanthyroid stimulating hormone measurement  IAGPrs9744816405850206 GWAS_CATALOGPMID:37872160
Experimental Data Annotations     Click to see Annotation Detail View

Clinical Measurement

References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
1318611GALK2galactokinase 2154915577449367740Human
1605268FAM227Bfamily with sequence similarity 227 member B154932697049620818Human

Position Markers

Peak: (rs9744816)
Human AssemblyChrPosition (strand)Source
GRCh381549,360,033 - 49,360,034RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1643273BW330_HBody Weight QTL 330 (human)1.050.014Body weightbody mass index152686671952866719Human
1559411SCL107_HSerum cholesterol level QTL 107 (human)3.88Lipid leveltriglyceride152654355252543552Human
2299958PRSTS330_HProstate tumor susceptibility QTL 330 (human)1.020.0151Prostate tumor susceptibility153479023060790230Human
1559354LDLPS4_HLow density lipoprotein particle size QTL 4 (human)2.20.019LDL particle size153479023060790230Human
407037309GWAS686285_Hthyroid stimulating hormone measurement QTL GWAS686285 (human)5e-51thyroid stimulating hormone measurementblood thyroid stimulating hormone level (CMO:0001247)154936003349360034Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS686285_H GCST90296333 Thyroid stimulating hormone levels 247,107 European ancestry individuals C 0.7937 5E-51 50.302 rs9744816 0.0679 thyroid stimulating hormone measurement (EFO:0004748)
 PMID:37872160
Database Acc Id Source(s)
GWAS Catalog GCST90296333 GWAS Catalog

RGD Curation Notes
Note Type Note Reference