GWAS685732_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS685732_H (thyroid stimulating hormone measurement QTL GWAS685732 (human)) Homo sapiens

Symbol: GWAS685732_H
Name: thyroid stimulating hormone measurement QTL GWAS685732 (human)
RGD ID: 407036756
Trait: thyroid stimulating hormone measurement
Measurement Type: blood thyroid stimulating hormone level   (CMO:0001247)    
LOD Score: Not Available
P Value: 2.0E-10
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh381540,437,201 - 40,437,202RGD_MAPPER_PIPELINEGRCh38
GRCh371540,729,400 - 40,729,401RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Data Annotations    Click to see Annotation Detail View

Clinical Measurement
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS685732_HHumanblood thyroid stimulating hormone level  IAGPrs1453184405850206Based on the EFO term IDGWAS_CATALOGPMID:37872160

Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS685732_HHumanthyroid stimulating hormone measurement  IAGPrs1453184405850206 GWAS_CATALOGPMID:37872160
Experimental Data Annotations     Click to see Annotation Detail View

Clinical Measurement

References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
155781816LOC127829316H3K27ac-H3K4me1 hESC enhancer GRCh37_chr15:40729169-40729706154043697040437507Human

Position Markers

Peak: (rs1453184)
Human AssemblyChrPosition (strand)Source
GRCh381540,437,201 - 40,437,202RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1643273BW330_HBody Weight QTL 330 (human)1.050.014Body weightbody mass index152686671952866719Human
2289410BW327_HBody weight QTL 327 (human)3.320.0001Body fat amount151998012945980129Human
1559411SCL107_HSerum cholesterol level QTL 107 (human)3.88Lipid leveltriglyceride152654355252543552Human
2289430BMD7_HBone mineral density QTL 7 (human)3.320.0001Bone mineral density151998012945980129Human
2299958PRSTS330_HProstate tumor susceptibility QTL 330 (human)1.020.0151Prostate tumor susceptibility153479023060790230Human
407036756GWAS685732_Hthyroid stimulating hormone measurement QTL GWAS685732 (human)2e-10thyroid stimulating hormone measurementblood thyroid stimulating hormone level (CMO:0001247)154043720140437202Human
1643523BW284_HBody Weight QTL 284 (human)1.950.0013Body weight152179288947792889Human
1559354LDLPS4_HLow density lipoprotein particle size QTL 4 (human)2.20.019LDL particle size153479023060790230Human
2289420BW314_HBody weight QTL 314 (human)2.720.0003Body weightlean mass151998012945980129Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS685732_H GCST90296333 Thyroid stimulating hormone levels 247,107 European ancestry individuals A 0.4573 2E-10 9.699 rs1453184 0.0165 thyroid stimulating hormone measurement (EFO:0004748)
 PMID:37872160
Database Acc Id Source(s)
GWAS Catalog GCST90296333 GWAS Catalog

RGD Curation Notes
Note Type Note Reference