GWAS680425_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS680425_H (ulcerative colitis QTL GWAS680425 (human)) Homo sapiens

Symbol: GWAS680425_H
Name: ulcerative colitis QTL GWAS680425 (human)
RGD ID: 407031449
Trait: ulcerative colitis
LOD Score: Not Available
P Value: 8.0E-8
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh381541,443,512 - 41,443,513RGD_MAPPER_PIPELINEGRCh38
GRCh371541,735,710 - 41,735,711RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Disease Annotations     Click to see Annotation Detail View

Phenotype Annotations     Click to see Annotation Detail View

Human Phenotype
References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
1321684RTF1RTF1 homolog, Paf1/RNA polymerase II complex component154141709541483563Human

Position Markers

Peak: (rs2777491)
Human AssemblyChrPosition (strand)Source
GRCh381541,443,512 - 41,443,513RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2289410BW327_HBody weight QTL 327 (human)3.320.0001Body fat amount151998012945980129Human
1643273BW330_HBody Weight QTL 330 (human)1.050.014Body weightbody mass index152686671952866719Human
2289430BMD7_HBone mineral density QTL 7 (human)3.320.0001Bone mineral density151998012945980129Human
1559411SCL107_HSerum cholesterol level QTL 107 (human)3.88Lipid leveltriglyceride152654355252543552Human
2299958PRSTS330_HProstate tumor susceptibility QTL 330 (human)1.020.0151Prostate tumor susceptibility153479023060790230Human
1643523BW284_HBody Weight QTL 284 (human)1.950.0013Body weight152179288947792889Human
407031449GWAS680425_Hulcerative colitis QTL GWAS680425 (human)8e-08ulcerative colitis154144351241443513Human
1559354LDLPS4_HLow density lipoprotein particle size QTL 4 (human)2.20.019LDL particle size153479023060790230Human
2289420BW314_HBody weight QTL 314 (human)2.720.0003Body weightlean mass151998012945980129Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS680425_H GCST003045 Ulcerative colitis 6,968 European ancestry cases, 20,464 European ancestry controls ? NR 8E-8 7.097 rs2777491 N/A ulcerative colitis (EFO:0000729)
 PMID:26192919
Database Acc Id Source(s)
GWAS Catalog GCST003045 GWAS Catalog

RGD Curation Notes
Note Type Note Reference